Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47040 * 300.00148 * 3 2 1 6 6 H 1.48505 * 109.47172 * 60.00080 * 3 2 1 7 7 C 1.39931 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 193.80554 * 7 2 1 9 9 C 1.41410 * 120.00098 * 13.80524 * 7 2 1 10 10 C 1.40767 * 120.21509 * 26.01572 * 9 7 2 11 11 C 1.37627 * 119.85198 * 180.02562 * 10 9 7 12 12 C 1.38566 * 120.30927 * 359.72905 * 11 10 9 13 13 C 1.39122 * 120.43972 * 0.54879 * 12 11 10 14 14 O 1.35896 * 119.93042 * 179.72169 * 13 12 11 15 15 C 1.42898 * 117.00125 * 5.71218 * 14 13 12 16 16 C 1.54030 * 113.81900 * 157.43893 * 15 14 13 17 17 O 1.44178 * 85.66497 * 136.73837 * 16 15 14 18 18 C 1.44442 * 93.22915 * 335.92708 * 17 16 15 19 19 C 1.38136 * 120.13317 * 359.45170 * 13 12 11 20 20 H 0.96998 * 119.99607 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.07150 * 0.02562 * 10 9 7 22 22 H 1.08004 * 119.84612 * 180.02562 * 11 10 9 23 23 H 1.07994 * 119.78168 * 180.29681 * 12 11 10 24 24 H 1.09004 * 113.08706 * 25.53081 * 15 14 13 25 25 H 1.09000 * 113.86676 * 250.95000 * 16 15 14 26 26 H 1.09006 * 113.86246 * 22.52430 * 16 15 14 27 27 H 1.08999 * 113.74745 * 269.91892 * 18 17 16 28 28 H 1.08995 * 114.05769 * 138.26511 * 18 17 16 29 29 H 1.07998 * 120.15122 * 180.25481 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0646 -1.2254 0.2237 9 6 1.3315 -2.4189 -0.2911 10 6 0.1699 -2.4057 -1.0861 11 6 -0.4829 -3.5849 -1.3649 12 6 0.0012 -4.7858 -0.8713 13 6 1.1449 -4.8127 -0.0797 14 8 1.6073 -5.9956 0.4036 15 6 0.9460 -7.1814 -0.0419 16 6 1.8057 -8.4542 0.0745 17 8 0.6123 -9.0817 0.5853 18 6 0.0439 -7.8290 1.0258 19 6 1.8144 -3.6400 0.2115 20 1 -0.4849 0.8401 0.0004 21 1 -0.2082 -1.4725 -1.4763 22 1 -1.3739 -3.5747 -1.9752 23 1 -0.5151 -5.7065 -1.0994 24 1 0.4639 -7.0631 -1.0123 25 1 2.1369 -8.8519 -0.8848 26 1 2.6108 -8.3772 0.8052 27 1 0.3097 -7.5619 2.0486 28 1 -1.0221 -7.7287 0.8221 29 1 2.7046 -3.6611 0.8226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214550079.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = -48.113228 kcal Electronic energy + Delta-G solvation = -14242.255120 eV Core-core repulsion = 11710.126819 eV Total energy + Delta-G solvation = -2532.128301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.68236 -39.88006 -37.83285 -35.26943 -31.88655 -30.83564 -29.24632 -27.64026 -27.23865 -23.33493 -22.83708 -21.27263 -19.91478 -18.14086 -17.61610 -17.19652 -17.04611 -16.48930 -16.19552 -15.39496 -15.02700 -14.88254 -14.11152 -13.69697 -13.63349 -13.40200 -12.90601 -12.83226 -12.45776 -12.32501 -12.12452 -11.86701 -11.52565 -11.22556 -11.00729 -10.76439 -9.48601 -8.80654 -8.63438 -6.44057 0.89574 1.09936 1.39497 1.50624 1.54917 2.20226 2.42740 2.56560 2.70833 3.24226 3.69534 3.82564 4.14572 4.30395 4.32771 4.49021 4.53028 4.65596 4.86478 4.96245 5.01755 5.04867 5.10791 5.27147 5.51828 5.79987 5.88940 6.06432 6.17509 6.52579 6.77453 6.90180 7.00940 8.31234 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.067437 B = 0.006099 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.102202 B = 4590.080626 C = 4830.427372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.109 3.891 10 C -0.212 4.212 11 C -0.076 4.076 12 C -0.315 4.315 13 C 0.140 3.860 14 O -0.323 6.323 15 C 0.002 3.998 16 C 0.049 3.951 17 O -0.388 6.388 18 C 0.022 3.978 19 C -0.279 4.279 20 H 0.290 0.710 21 H 0.108 0.892 22 H 0.119 0.881 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -7.627 -0.996 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.106 3.894 10 C -0.232 4.232 11 C -0.095 4.095 12 C -0.335 4.335 13 C 0.096 3.904 14 O -0.238 6.238 15 C -0.055 4.055 16 C -0.027 4.027 17 O -0.308 6.308 18 C -0.054 4.054 19 C -0.299 4.299 20 H 0.101 0.899 21 H 0.126 0.874 22 H 0.137 0.863 23 H 0.146 0.854 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.325 -7.787 -0.838 7.839 hybrid contribution 0.088 0.931 0.024 0.935 sum 0.414 -6.857 -0.814 6.917 Atomic orbital electron populations 1.69874 1.08944 1.30630 1.35362 1.26804 0.95631 1.04575 0.91058 0.85074 0.79251 0.75789 0.79074 1.18243 1.18609 1.18948 1.19882 0.97057 0.91832 1.43683 0.90580 1.17732 0.91690 0.91998 0.87976 1.21344 1.00153 0.97430 1.04245 1.20818 0.98328 0.92230 0.98111 1.20748 1.01777 0.98565 1.12367 1.18761 0.93286 0.84422 0.93885 1.86079 1.58004 1.12897 1.66772 1.26307 0.95485 0.83543 1.00172 1.24423 0.89645 0.86953 1.01705 1.89711 1.33289 1.27833 1.79920 1.24723 1.00475 0.81164 0.99069 1.20417 1.05674 0.91340 1.12502 0.89944 0.87371 0.86280 0.85421 0.86788 0.85854 0.88511 0.89134 0.87132 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.70 10.82 21.82 0.24 -42.47 15 2 C 0.03 1.73 5.21 85.25 0.44 2.17 15 3 Si 0.99 37.91 29.58 68.60 2.03 39.94 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.26 -9.54 7.11 99.48 0.71 -8.84 15 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 7 C -0.50 -27.09 9.06 23.46 0.21 -26.88 15 8 H 0.08 4.03 7.88 -2.91 -0.02 4.01 15 9 C 0.11 6.01 5.57 -21.30 -0.12 5.89 15 10 C -0.21 -11.23 8.68 22.74 0.20 -11.03 15 11 C -0.08 -3.51 10.02 22.20 0.22 -3.29 15 12 C -0.32 -13.50 9.03 22.56 0.20 -13.29 15 13 C 0.14 6.44 6.67 22.46 0.15 6.59 15 14 O -0.32 -12.66 10.16 -92.38 -0.94 -13.60 15 15 C 0.00 0.05 3.92 31.29 0.12 0.17 15 16 C 0.05 1.17 9.04 72.27 0.65 1.82 15 17 O -0.39 -10.47 12.47 -148.98 -1.86 -12.32 15 18 C 0.02 0.59 9.05 72.28 0.65 1.24 15 19 C -0.28 -14.52 9.73 22.82 0.22 -14.29 15 20 H 0.29 13.45 8.30 -92.71 -0.77 12.68 15 21 H 0.11 5.93 6.12 -2.91 -0.02 5.91 15 22 H 0.12 4.68 8.06 -2.91 -0.02 4.65 15 23 H 0.13 4.53 5.89 -2.91 -0.02 4.51 15 24 H 0.11 3.24 5.97 -2.38 -0.01 3.22 15 25 H 0.12 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.10 2.19 8.14 -2.38 -0.02 2.17 15 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 29 H 0.09 4.85 8.06 -2.91 -0.02 4.83 15 Total: -1.00 -60.71 253.17 3.59 -57.12 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.15 Total: 22.23 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 2.96 Total: -50.90 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.24 Total: -42.47 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -2.80 Total: -25.92 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -60.71 3.59 -57.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214550079.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.006 kcal (2) G-P(sol) polarization free energy of solvation -60.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds