Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.39190 * 2 1 4 4 C 1.52557 * 110.34304 * 237.75722 * 2 1 3 5 5 C 1.50283 * 112.24954 * 241.06413 * 4 2 1 6 6 C 1.39870 * 126.29281 * 180.09380 * 5 4 2 7 7 C 1.38267 * 121.68002 * 179.97438 * 6 5 4 8 8 C 1.36434 * 120.79079 * 359.97438 * 7 6 5 9 9 C 1.40492 * 119.21306 * 359.97438 * 8 7 6 10 10 C 1.40967 * 120.10373 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00847 * 204.83494 * 10 9 8 12 12 C 1.39907 * 119.99583 * 24.84090 * 10 9 8 13 13 N 1.30892 * 119.99918 * 17.85602 * 12 10 9 14 14 Si 1.86800 * 120.00066 * 197.85302 * 12 10 9 15 15 H 1.48507 * 109.46937 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47031 * 119.99903 * 14 12 10 17 17 H 1.48492 * 109.47584 * 240.00178 * 14 12 10 18 18 C 1.37973 * 115.49347 * 0.07036 * 5 4 2 19 19 S 1.76693 * 110.25672 * 359.97438 * 18 5 4 20 20 H 1.09002 * 109.47389 * 182.24356 * 1 2 3 21 21 H 1.09010 * 109.47140 * 302.23867 * 1 2 3 22 22 H 1.08998 * 109.47163 * 62.24187 * 1 2 3 23 23 H 1.09003 * 108.91091 * 120.37366 * 4 2 1 24 24 H 1.09001 * 108.91689 * 1.75396 * 4 2 1 25 25 H 1.08008 * 119.16018 * 359.95470 * 6 5 4 26 26 H 1.08004 * 119.60317 * 179.97438 * 7 6 5 27 27 H 1.08004 * 120.39475 * 180.02562 * 8 7 6 28 28 H 0.97006 * 119.99901 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0603 -0.7631 -1.2098 5 6 2.8891 -1.9525 -0.8138 6 6 3.5163 -2.8510 -1.6831 7 6 4.2600 -3.9175 -1.2127 8 6 4.4076 -4.1291 0.1271 9 6 3.7934 -3.2474 1.0322 10 6 3.9331 -3.4487 2.4205 11 1 3.1866 -3.0643 3.0998 12 6 5.0389 -4.1463 2.9183 13 7 6.1017 -4.3071 2.1714 14 14 4.9986 -4.8482 4.6490 15 1 3.6924 -4.5323 5.2810 16 1 5.1760 -6.3215 4.5899 17 1 6.0951 -4.2495 5.4517 18 6 3.0286 -2.1536 0.5441 19 16 2.1581 -0.9040 1.4401 20 1 -0.3634 -1.0269 0.0402 21 1 -0.3634 0.5483 0.8693 22 1 -0.3633 0.4786 -0.9094 23 1 2.6720 -0.0907 -1.8113 24 1 1.2168 -1.1044 -1.8100 25 1 3.4169 -2.7083 -2.7491 26 1 4.7298 -4.5911 -1.9141 27 1 4.9902 -4.9640 0.4875 28 1 6.8686 -4.7905 2.5168 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214578032.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = 2.259138 kcal Electronic energy + Delta-G solvation = -12443.178070 eV Core-core repulsion = 10355.986950 eV Total energy + Delta-G solvation = -2087.191120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.92703 -35.14073 -33.39724 -30.08380 -29.83729 -25.76489 -25.37797 -22.10106 -20.81280 -19.94775 -17.24041 -16.08051 -15.10383 -14.83402 -14.23100 -13.87303 -13.78158 -12.78892 -12.61054 -12.29155 -11.81328 -11.70272 -11.43798 -11.11741 -10.89863 -10.80338 -10.61773 -10.44479 -9.87866 -9.76910 -9.21942 -8.97990 -8.47634 -7.37942 -6.87663 -6.32921 -4.37221 2.62063 2.70327 2.76917 3.05963 3.12436 3.16756 3.56299 3.90578 4.52561 5.10939 5.21144 5.45404 5.55068 5.74761 5.96490 6.04646 6.15896 6.22887 6.33711 6.44785 6.54435 6.93895 7.12306 7.18077 7.43533 7.62502 7.87798 7.99831 8.14300 8.52455 8.77153 8.84401 10.10083 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.010458 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.430322 B = 2676.629352 C = 3366.249405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 H 0.093 0.907 4 C -0.074 4.074 5 C -0.079 4.079 6 C -0.223 4.223 7 C -0.098 4.098 8 C -0.158 4.158 9 C 0.142 3.858 10 C -0.449 4.449 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.787 5.787 14 Si 0.909 3.091 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.273 1.273 18 C -0.180 4.180 19 S -0.156 6.156 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 3.346 -2.498 6.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.203 4.203 3 H 0.111 0.889 4 C -0.111 4.111 5 C -0.085 4.085 6 C -0.245 4.245 7 C -0.117 4.117 8 C -0.179 4.179 9 C 0.136 3.864 10 C -0.478 4.478 11 H 0.100 0.900 12 C -0.142 4.142 13 N -0.412 5.412 14 Si 0.733 3.267 15 H -0.182 1.182 16 H -0.196 1.196 17 H -0.198 1.198 18 C -0.293 4.293 19 S 0.084 5.916 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.958 3.563 -1.226 6.227 hybrid contribution 0.437 -0.583 -0.654 0.980 sum -4.521 2.980 -1.880 5.732 Atomic orbital electron populations 1.21917 0.92923 1.02737 1.01327 1.23243 0.98790 1.01440 0.96804 0.88887 1.20385 0.98815 0.95060 0.96888 1.19954 0.99253 0.96007 0.93265 1.19936 1.08155 1.00084 0.96278 1.20233 0.98665 0.97031 0.95805 1.20930 1.04590 1.00861 0.91520 1.17068 0.88342 0.87366 0.93657 1.19561 1.06060 1.29803 0.92400 0.89985 1.25942 0.94283 0.93827 1.00150 1.69865 1.02864 1.30466 1.37983 0.86230 0.79668 0.79179 0.81585 1.18169 1.19570 1.19827 1.21738 1.12761 1.01576 0.93230 1.85057 1.63166 1.30992 1.12416 0.91711 0.92297 0.92406 0.91062 0.90812 0.89580 0.89021 0.85823 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.99 37.16 0.33 -1.50 15 2 C -0.07 -1.27 3.86 -26.96 -0.10 -1.38 15 3 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 4 C -0.07 -1.35 6.00 -28.31 -0.17 -1.52 15 5 C -0.08 -1.81 5.99 -104.31 -0.63 -2.44 15 6 C -0.22 -5.08 9.96 -38.96 -0.39 -5.46 15 7 C -0.10 -2.30 9.93 -40.22 -0.40 -2.70 15 8 C -0.16 -4.11 8.64 -39.38 -0.34 -4.45 15 9 C 0.14 3.87 5.59 -106.53 -0.60 3.27 15 10 C -0.45 -12.15 8.79 -37.92 -0.33 -12.48 15 11 H 0.08 2.22 7.67 -52.49 -0.40 1.81 15 12 C 0.08 1.93 5.13 -17.33 -0.09 1.85 15 13 N -0.79 -20.24 10.97 55.55 0.61 -19.63 15 14 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 15 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 16 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 18 C -0.18 -4.58 6.32 -38.19 -0.24 -4.82 15 19 S -0.16 -3.44 22.03 -107.50 -2.37 -5.81 15 20 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.06 0.77 8.14 -51.92 -0.42 0.35 15 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.07 1.21 7.60 -51.93 -0.39 0.82 15 25 H 0.09 1.72 8.06 -52.48 -0.42 1.30 15 26 H 0.09 1.90 8.06 -52.48 -0.42 1.48 15 27 H 0.12 3.27 6.18 -52.48 -0.32 2.95 15 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15 LS Contribution 249.70 15.07 3.76 3.76 Total: -1.00 -27.97 249.70 -9.19 -37.17 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.22 Total: 2.35 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -2.95 Total: -31.64 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.61 Total: -19.63 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.37 Total: -5.81 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.97 -9.19 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214578032.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.428 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds