Wall clock time and date at job start Mon Mar 30 2020 02:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.30778 * 2 1 4 4 C 1.52558 * 110.34147 * 122.18237 * 2 1 3 5 5 C 1.50269 * 112.35457 * 118.86640 * 4 2 1 6 6 C 1.39889 * 126.29241 * 179.97438 * 5 4 2 7 7 C 1.38267 * 121.67843 * 180.02562 * 6 5 4 8 8 C 1.36440 * 120.79039 * 0.02562 * 7 6 5 9 9 C 1.40490 * 119.21401 * 0.02562 * 8 7 6 10 10 C 1.40968 * 120.10139 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00398 * 204.81854 * 10 9 8 12 12 C 1.39905 * 119.99946 * 24.80630 * 10 9 8 13 13 N 1.30896 * 120.00043 * 17.86157 * 12 10 9 14 14 Si 1.86799 * 119.99849 * 197.86369 * 12 10 9 15 15 H 1.48494 * 109.47397 * 90.00088 * 14 12 10 16 16 H 1.48509 * 109.46832 * 210.00131 * 14 12 10 17 17 H 1.48503 * 109.47350 * 329.99760 * 14 12 10 18 18 C 1.37976 * 115.49606 * 359.97438 * 5 4 2 19 19 S 1.76686 * 110.25498 * 359.97438 * 18 5 4 20 20 H 1.09004 * 109.47110 * 297.82137 * 1 2 3 21 21 H 1.08994 * 109.46952 * 177.81760 * 1 2 3 22 22 H 1.09006 * 109.46948 * 57.81496 * 1 2 3 23 23 H 1.09002 * 108.91114 * 239.62695 * 4 2 1 24 24 H 1.08997 * 108.91449 * 358.10516 * 4 2 1 25 25 H 1.07998 * 119.15754 * 0.02562 * 6 5 4 26 26 H 1.07995 * 119.60076 * 180.02562 * 7 6 5 27 27 H 1.08001 * 120.39155 * 179.97438 * 8 7 6 28 28 H 0.96993 * 119.99961 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0604 -0.7619 1.2107 5 6 2.8881 -1.9532 0.8186 6 6 3.5130 -2.8505 1.6910 7 6 4.2560 -3.9191 1.2240 8 6 4.4051 -4.1339 -0.1151 9 6 3.7934 -3.2536 -1.0231 10 6 3.9357 -3.4577 -2.4106 11 1 3.8356 -2.6257 -3.0919 12 6 4.2068 -4.7380 -2.9052 13 7 3.9875 -5.7889 -2.1563 14 14 4.8818 -4.9477 -4.6343 15 1 6.3659 -4.9198 -4.5931 16 1 4.4263 -6.2477 -5.1892 17 1 4.3897 -3.8424 -5.4953 18 6 3.0289 -2.1579 -0.5386 19 16 2.1597 -0.9104 -1.4387 20 1 -0.3633 0.4796 0.9089 21 1 -0.3633 -1.0269 -0.0391 22 1 -0.3633 0.5474 -0.8698 23 1 2.6721 -0.0888 1.8115 24 1 1.2169 -1.1003 1.8124 25 1 3.4126 -2.7050 2.7564 26 1 4.7238 -4.5916 1.9277 27 1 4.9873 -4.9704 -0.4727 28 1 4.1758 -6.6765 -2.4990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214578088.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:45 Heat of formation + Delta-G solvation = -11.805252 kcal Electronic energy + Delta-G solvation = -12447.912765 eV Core-core repulsion = 10360.111768 eV Total energy + Delta-G solvation = -2087.800998 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.70674 -36.73790 -35.15723 -31.76735 -31.64046 -27.37057 -27.16326 -23.67924 -22.59440 -21.62577 -19.09300 -17.88981 -16.85894 -16.30516 -15.84530 -15.58095 -15.46172 -14.48487 -14.13085 -13.73027 -13.54074 -13.29674 -12.95528 -12.79138 -12.72087 -12.18890 -12.16355 -12.11824 -11.64574 -11.49230 -11.07391 -10.66493 -10.29010 -9.26525 -8.74788 -8.10207 -6.34602 0.86365 0.91736 1.08272 1.34401 1.47894 1.48464 1.84745 2.17610 2.64563 3.56619 3.77414 3.96400 4.03056 4.47567 4.55790 4.68552 4.76443 4.80252 4.92712 4.99895 5.03869 5.22199 5.29651 5.33324 5.59074 5.77860 5.95608 6.10253 6.24611 6.58688 6.82892 6.91872 8.25704 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.010488 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.863141 B = 2669.120622 C = 3331.827222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 H 0.119 0.881 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.224 4.224 7 C -0.102 4.102 8 C -0.186 4.186 9 C 0.106 3.894 10 C -0.486 4.486 11 H 0.068 0.932 12 C 0.038 3.962 13 N -0.818 5.818 14 Si 0.981 3.019 15 H -0.258 1.258 16 H -0.262 1.262 17 H -0.263 1.263 18 C -0.208 4.208 19 S -0.203 6.203 20 H 0.095 0.905 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 6.480 3.679 8.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 H 0.137 0.863 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.244 4.244 7 C -0.122 4.122 8 C -0.207 4.207 9 C 0.100 3.900 10 C -0.515 4.515 11 H 0.086 0.914 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.802 3.198 15 H -0.182 1.182 16 H -0.187 1.187 17 H -0.187 1.187 18 C -0.321 4.321 19 S 0.037 5.963 20 H 0.114 0.886 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.351 6.520 2.422 7.721 hybrid contribution 0.663 -0.860 0.431 1.168 sum -2.688 5.660 2.854 6.885 Atomic orbital electron populations 1.21909 0.90565 1.02401 1.03648 1.23518 1.00595 1.01268 0.93089 0.86300 1.20479 0.99382 0.93690 0.97635 1.20637 0.98885 0.97328 0.92359 1.20386 1.07324 0.98635 0.98096 1.20572 0.98968 0.97373 0.95259 1.20914 1.04677 1.02352 0.92806 1.17470 0.88542 0.89705 0.94239 1.19644 1.44194 0.95033 0.92663 0.91420 1.26742 0.92329 0.94482 1.04227 1.69889 1.34326 1.00112 1.39975 0.85215 0.79469 0.78788 0.76357 1.18238 1.18665 1.18738 1.22113 1.10029 1.04838 0.95101 1.85095 1.64098 1.30517 1.16639 0.88647 0.93367 0.91371 0.88401 0.88537 0.86129 0.86420 0.87366 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.00 71.98 0.65 -2.52 15 2 C -0.06 -1.76 3.87 30.45 0.12 -1.64 15 3 H 0.12 3.14 8.14 -2.39 -0.02 3.12 15 4 C -0.07 -2.43 6.00 29.57 0.18 -2.26 15 5 C -0.09 -3.82 5.99 -19.66 -0.12 -3.94 15 6 C -0.22 -9.73 9.96 22.68 0.23 -9.50 15 7 C -0.10 -4.79 9.93 21.86 0.22 -4.57 15 8 C -0.19 -10.06 8.64 22.40 0.19 -9.86 15 9 C 0.11 6.03 5.59 -21.10 -0.12 5.91 15 10 C -0.49 -27.62 8.79 23.34 0.21 -27.42 15 11 H 0.07 3.88 7.68 -2.91 -0.02 3.86 15 12 C 0.04 1.98 5.13 85.24 0.44 2.42 15 13 N -0.82 -43.52 10.97 21.82 0.24 -43.28 15 14 Si 0.98 39.66 29.60 68.60 2.03 41.69 15 15 H -0.26 -9.98 7.11 99.48 0.71 -9.28 15 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 17 H -0.26 -10.65 7.11 99.48 0.71 -9.95 15 18 C -0.21 -10.71 6.32 23.17 0.15 -10.57 15 19 S -0.20 -8.96 22.05 -56.49 -1.25 -10.21 15 20 H 0.09 1.74 8.14 -2.38 -0.02 1.72 15 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.07 1.59 8.14 -2.38 -0.02 1.57 15 23 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 24 H 0.10 2.76 7.60 -2.39 -0.02 2.75 15 25 H 0.12 4.36 8.06 -2.91 -0.02 4.33 15 26 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 27 H 0.11 6.03 6.18 -2.91 -0.02 6.01 15 28 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 Total: -1.00 -63.21 249.72 4.31 -58.90 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.15 Total: 16.85 kcal Atomic # 6 Polarization: -66.08 SS G_CDS: 2.13 Total: -63.95 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.24 Total: -43.28 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.25 Total: -10.21 kcal Total: -63.21 4.31 -58.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214578088.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.095 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds