Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 111.01102 * 2 1 4 4 C 1.54147 * 111.11090 * 235.81344 * 2 1 3 5 5 C 1.50877 * 110.50693 * 270.16321 * 4 2 1 6 6 C 1.38319 * 115.51882 * 339.72133 * 5 4 2 7 7 C 1.39250 * 121.28610 * 180.42413 * 6 5 4 8 8 C 1.38447 * 120.69781 * 359.85264 * 7 6 5 9 9 C 1.37655 * 119.56502 * 359.91574 * 8 7 6 10 10 C 1.40237 * 120.25430 * 0.04463 * 9 8 7 11 11 C 1.41418 * 119.72746 * 180.17848 * 10 9 8 12 12 H 1.07995 * 119.99905 * 205.47542 * 11 10 9 13 13 C 1.39931 * 119.99974 * 25.48456 * 11 10 9 14 14 N 1.30831 * 119.99782 * 17.85042 * 13 11 10 15 15 Si 1.86801 * 119.99789 * 197.85483 * 13 11 10 16 16 H 1.48501 * 109.47082 * 89.99463 * 15 13 11 17 17 H 1.48498 * 109.46954 * 209.99832 * 15 13 11 18 18 H 1.48504 * 109.46936 * 329.99714 * 15 13 11 19 19 S 1.77483 * 108.29705 * 0.40148 * 6 5 4 20 20 H 1.09001 * 109.47147 * 297.26007 * 1 2 3 21 21 H 1.08998 * 109.47371 * 57.26282 * 1 2 3 22 22 H 1.09006 * 109.47064 * 177.26457 * 1 2 3 23 23 H 1.09005 * 109.28180 * 30.44301 * 4 2 1 24 24 H 1.08998 * 109.27828 * 149.87869 * 4 2 1 25 25 H 1.07999 * 119.65134 * 179.82664 * 7 6 5 26 26 H 1.07997 * 120.21612 * 179.97438 * 8 7 6 27 27 H 1.07995 * 119.86746 * 180.02562 * 9 8 7 28 28 H 0.96998 * 119.99672 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9208 1.0175 0.0000 4 6 2.0852 -0.8080 -1.1895 5 6 2.2719 -2.2549 -0.8046 6 6 2.3531 -2.5044 0.5535 7 6 2.5340 -3.7959 1.0418 8 6 2.6350 -4.8713 0.1758 9 6 2.5538 -4.6599 -1.1820 10 6 2.3708 -3.3639 -1.6856 11 6 2.2851 -3.1600 -3.0824 12 1 2.5536 -2.2035 -3.5059 13 6 1.8522 -4.1975 -3.9156 14 7 1.2046 -5.2156 -3.4100 15 14 2.1991 -4.1287 -5.7499 16 1 3.5034 -4.7802 -6.0317 17 1 1.1217 -4.8393 -6.4843 18 1 2.2479 -2.7117 -6.1916 19 16 2.1903 -0.9609 1.4144 20 1 -0.3633 0.4707 0.9135 21 1 -0.3634 0.5557 -0.8644 22 1 -0.3633 -1.0266 -0.0490 23 1 1.3874 -0.7450 -2.0245 24 1 3.0451 -0.3894 -1.4922 25 1 2.5966 -3.9603 2.1074 26 1 2.7757 -5.8696 0.5630 27 1 2.6315 -5.4953 -1.8619 28 1 0.9048 -5.9349 -3.9876 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214578296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = -9.240597 kcal Electronic energy + Delta-G solvation = -12562.703265 eV Core-core repulsion = 10475.013479 eV Total energy + Delta-G solvation = -2087.689786 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.73024 -36.20554 -35.44842 -31.84153 -31.28873 -27.92256 -26.70185 -23.73755 -22.60196 -21.28576 -19.49951 -17.69818 -16.72238 -15.99336 -15.91643 -15.76659 -15.49686 -14.56067 -14.01353 -13.73619 -13.54589 -13.29595 -13.08720 -12.86694 -12.65071 -12.27177 -12.18135 -12.08590 -11.63958 -11.32113 -11.10811 -10.81116 -10.19467 -9.31838 -8.67632 -8.16186 -6.37763 0.75828 0.88207 0.97334 1.38727 1.47296 1.51463 1.54298 2.19366 2.66465 3.56439 3.78303 3.99170 4.11925 4.41497 4.52497 4.67263 4.82139 4.89341 4.94185 5.01856 5.10142 5.16736 5.28062 5.34395 5.57930 5.79554 5.99054 6.03628 6.20497 6.60524 6.88024 6.94026 8.29873 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.010259 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.593735 B = 2728.688788 C = 3297.122921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.037 4.037 3 H 0.141 0.859 4 C -0.057 4.057 5 C -0.227 4.227 6 C -0.060 4.060 7 C -0.217 4.217 8 C -0.095 4.095 9 C -0.189 4.189 10 C 0.102 3.898 11 C -0.488 4.488 12 H 0.080 0.920 13 C 0.037 3.963 14 N -0.821 5.821 15 Si 0.981 3.019 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.256 1.256 19 S -0.206 6.206 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 6.244 0.707 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 H 0.158 0.842 4 C -0.094 4.094 5 C -0.233 4.233 6 C -0.172 4.172 7 C -0.241 4.241 8 C -0.115 4.115 9 C -0.209 4.209 10 C 0.098 3.902 11 C -0.517 4.517 12 H 0.098 0.902 13 C -0.178 4.178 14 N -0.447 5.447 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.180 1.180 19 S 0.034 5.966 20 H 0.097 0.903 21 H 0.105 0.895 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.369 6.488 1.882 6.765 hybrid contribution -0.109 -1.001 -1.828 2.087 sum -0.478 5.486 0.054 5.507 Atomic orbital electron populations 1.21890 0.91621 1.01768 1.03621 1.24127 0.99707 1.00863 0.91808 0.84153 1.20581 1.01134 0.90101 0.97611 1.20990 1.14423 0.95736 0.92181 1.21783 1.04473 0.95654 0.95303 1.19990 1.15262 0.90480 0.98361 1.20883 0.99557 0.97636 0.93396 1.21188 1.07653 0.97561 0.94529 1.17719 0.88359 0.90653 0.93480 1.19812 1.40485 0.99588 0.91781 0.90197 1.26762 0.91419 0.93611 1.06038 1.69883 1.25763 1.08860 1.40184 0.85216 0.78966 0.79889 0.75774 1.18825 1.19348 1.17951 1.85268 1.82726 1.05636 1.22949 0.90255 0.89519 0.94701 0.90676 0.90975 0.87234 0.85975 0.87497 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.30 71.98 0.67 -3.09 15 2 C -0.04 -1.19 4.05 30.98 0.13 -1.07 15 3 H 0.14 3.54 8.14 -2.39 -0.02 3.52 15 4 C -0.06 -2.23 5.15 30.29 0.16 -2.07 15 5 C -0.23 -11.05 5.99 -18.86 -0.11 -11.16 15 6 C -0.06 -2.85 6.48 22.53 0.15 -2.70 15 7 C -0.22 -10.14 10.06 22.56 0.23 -9.92 15 8 C -0.09 -4.51 10.06 22.18 0.22 -4.29 15 9 C -0.19 -10.00 8.62 22.62 0.20 -9.81 15 10 C 0.10 5.47 5.59 -21.08 -0.12 5.36 15 11 C -0.49 -25.44 8.57 23.46 0.20 -25.24 15 12 H 0.08 3.99 7.57 -2.91 -0.02 3.97 15 13 C 0.04 1.83 5.11 85.25 0.44 2.27 15 14 N -0.82 -42.13 10.99 21.82 0.24 -41.89 15 15 Si 0.98 37.06 29.60 68.60 2.03 39.09 15 16 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 17 H -0.27 -9.69 7.11 99.48 0.71 -8.99 15 18 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 19 S -0.21 -7.92 22.56 -56.49 -1.27 -9.19 15 20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.03 1.22 8.14 -2.38 -0.02 1.20 15 23 H 0.07 2.96 7.69 -2.38 -0.02 2.94 15 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.11 4.61 8.06 -2.91 -0.02 4.58 15 26 H 0.12 5.02 8.06 -2.91 -0.02 4.99 15 27 H 0.11 5.84 6.16 -2.91 -0.02 5.82 15 28 H 0.29 13.39 8.30 -92.71 -0.77 12.62 15 Total: -1.00 -58.33 249.97 4.29 -54.04 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.15 Total: 19.68 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 2.15 Total: -61.72 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.24 Total: -41.89 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.27 Total: -9.19 kcal Total: -58.33 4.29 -54.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214578296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.797 kcal (2) G-P(sol) polarization free energy of solvation -58.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds