Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.35626 * 2 1 4 4 C 1.52491 * 110.31864 * 237.83612 * 2 1 3 5 5 C 1.50264 * 112.29201 * 241.02350 * 4 2 1 6 6 C 1.38056 * 126.09212 * 180.08998 * 5 4 2 7 7 C 1.40265 * 120.92818 * 180.02562 * 6 5 4 8 8 C 1.41064 * 120.11584 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00543 * 24.52354 * 8 7 6 10 10 C 1.39832 * 119.99793 * 204.52693 * 8 7 6 11 11 N 1.30930 * 120.00403 * 17.96695 * 10 8 7 12 12 Si 1.86803 * 120.00086 * 197.96577 * 10 8 7 13 13 H 1.48503 * 109.46810 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47098 * 120.00093 * 12 10 8 15 15 H 1.48498 * 109.47259 * 240.00017 * 12 10 8 16 16 C 1.40942 * 119.76469 * 359.97438 * 7 6 5 17 17 C 1.35947 * 119.14624 * 359.97438 * 16 7 6 18 18 C 1.38867 * 115.41975 * 0.06837 * 5 4 2 19 19 S 1.76816 * 110.04807 * 359.97438 * 18 5 4 20 20 H 1.09000 * 109.46784 * 182.16574 * 1 2 3 21 21 H 1.09003 * 109.47016 * 302.16469 * 1 2 3 22 22 H 1.08993 * 109.46940 * 62.16954 * 1 2 3 23 23 H 1.08995 * 108.90911 * 120.32139 * 4 2 1 24 24 H 1.09004 * 108.90867 * 1.72055 * 4 2 1 25 25 H 1.08003 * 119.53985 * 359.97274 * 6 5 4 26 26 H 0.96993 * 120.00378 * 179.97438 * 11 10 8 27 27 H 1.08001 * 120.42689 * 179.97438 * 16 7 6 28 28 H 1.07997 * 119.61473 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0596 -0.7613 -1.2106 5 6 2.8891 -1.9509 -0.8176 6 6 3.5057 -2.8336 -1.6816 7 6 4.2575 -3.9129 -1.1944 8 6 4.8808 -4.8041 -2.0929 9 1 5.1287 -4.4782 -3.0922 10 6 5.1777 -6.1097 -1.6895 11 7 4.5849 -6.6216 -0.6403 12 14 6.4201 -7.1236 -2.6476 13 1 6.9432 -6.3218 -3.7828 14 1 7.5417 -7.5066 -1.7529 15 1 5.7625 -8.3487 -3.1691 16 6 4.3889 -4.1031 0.1959 17 6 3.7812 -3.2313 1.0438 18 6 3.0302 -2.1541 0.5489 19 16 2.1572 -0.9018 1.4412 20 1 -0.3633 -1.0269 0.0388 21 1 -0.3633 0.5471 0.8700 22 1 -0.3633 0.4797 -0.9087 23 1 2.6704 -0.0879 -1.8118 24 1 1.2156 -1.1019 -1.8105 25 1 3.4072 -2.6917 -2.7478 26 1 4.7905 -7.5273 -0.3607 27 1 4.9649 -4.9308 0.5827 28 1 3.8773 -3.3697 2.1105 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214579238.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = -12.763683 kcal Electronic energy + Delta-G solvation = -12285.812104 eV Core-core repulsion = 10197.969545 eV Total energy + Delta-G solvation = -2087.842558 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81241 -36.79006 -35.12954 -31.81841 -31.67541 -27.68988 -26.96808 -23.69682 -22.59743 -21.73040 -19.00897 -18.02482 -17.09135 -16.26983 -15.85745 -15.62114 -15.34785 -14.34613 -14.10857 -13.92601 -13.60036 -13.42569 -12.99839 -12.83359 -12.56440 -12.45421 -12.21132 -12.04778 -11.71518 -11.38265 -11.16582 -10.85255 -10.10992 -9.39704 -8.73073 -8.24082 -6.33052 0.76518 0.97553 1.00396 1.38200 1.46390 1.54131 1.66150 2.18413 2.60479 3.56893 3.74218 3.92886 4.02051 4.30628 4.45980 4.71895 4.75261 4.90298 4.91812 4.96558 5.01908 5.15566 5.29076 5.33032 5.59530 5.67398 5.89311 6.01015 6.21668 6.56633 6.84895 6.90121 8.26180 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.062572 B = 0.007284 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.374425 B = 3843.050919 C = 4120.151855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.050 4.050 3 H 0.122 0.878 4 C -0.078 4.078 5 C -0.073 4.073 6 C -0.229 4.229 7 C 0.087 3.913 8 C -0.489 4.489 9 H 0.081 0.919 10 C 0.035 3.965 11 N -0.821 5.821 12 Si 0.987 3.013 13 H -0.256 1.256 14 H -0.264 1.264 15 H -0.265 1.265 16 C -0.170 4.170 17 C -0.079 4.079 18 C -0.218 4.218 19 S -0.196 6.196 20 H 0.049 0.951 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.291 0.709 27 H 0.111 0.889 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 7.223 -1.286 8.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.178 4.178 3 H 0.140 0.860 4 C -0.116 4.116 5 C -0.078 4.078 6 C -0.250 4.250 7 C 0.083 3.917 8 C -0.518 4.518 9 H 0.099 0.901 10 C -0.180 4.180 11 N -0.447 5.447 12 Si 0.807 3.193 13 H -0.179 1.179 14 H -0.188 1.188 15 H -0.189 1.189 16 C -0.191 4.191 17 C -0.102 4.102 18 C -0.330 4.330 19 S 0.042 5.958 20 H 0.069 0.931 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.833 7.310 0.104 8.254 hybrid contribution 0.824 -1.168 -1.356 1.970 sum -3.010 6.142 -1.252 6.953 Atomic orbital electron populations 1.21937 0.90398 1.02604 1.03787 1.23421 1.00677 1.01310 0.92399 0.86023 1.20517 0.99336 0.93751 0.97974 1.20283 0.98235 0.96716 0.92550 1.20579 1.06198 1.00597 0.97672 1.17804 0.89276 0.91655 0.92953 1.19819 1.35377 0.96459 1.00158 0.90077 1.26835 0.96292 0.99072 0.95840 1.69916 1.34579 1.16360 1.23812 0.85093 0.77733 0.77615 0.78895 1.17948 1.18827 1.18924 1.20931 1.04252 1.00223 0.93689 1.20085 0.97915 0.94028 0.98166 1.21550 1.12619 1.03619 0.95212 1.84810 1.63980 1.30655 1.16325 0.93143 0.90882 0.88970 0.88670 0.88847 0.88079 0.89820 0.87093 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.99 71.98 0.65 -2.27 15 2 C -0.05 -1.42 3.85 30.43 0.12 -1.31 15 3 H 0.12 2.91 8.14 -2.39 -0.02 2.89 15 4 C -0.08 -2.57 5.98 29.54 0.18 -2.40 15 5 C -0.07 -3.26 5.95 -19.89 -0.12 -3.38 15 6 C -0.23 -11.43 9.64 22.72 0.22 -11.21 15 7 C 0.09 4.75 5.55 -21.43 -0.12 4.63 15 8 C -0.49 -26.17 9.02 23.35 0.21 -25.96 15 9 H 0.08 4.15 7.91 -2.91 -0.02 4.13 15 10 C 0.04 1.76 5.13 85.21 0.44 2.20 15 11 N -0.82 -42.72 10.96 21.81 0.24 -42.48 15 12 Si 0.99 37.43 29.60 68.60 2.03 39.46 15 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 14 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 15 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 16 C -0.17 -9.25 8.65 22.40 0.19 -9.05 15 17 C -0.08 -4.01 9.99 22.25 0.22 -3.78 15 18 C -0.22 -10.24 6.43 22.93 0.15 -10.09 15 19 S -0.20 -7.44 22.56 -56.49 -1.27 -8.72 15 20 H 0.05 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.09 2.79 7.59 -2.38 -0.02 2.77 15 25 H 0.10 4.69 8.06 -2.91 -0.02 4.67 15 26 H 0.29 13.56 8.30 -92.71 -0.77 12.79 15 27 H 0.11 6.20 6.18 -2.91 -0.02 6.18 15 28 H 0.10 4.69 8.06 -2.91 -0.02 4.67 15 Total: -1.00 -60.05 250.42 4.28 -55.78 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.15 Total: 18.60 kcal Atomic # 6 Polarization: -64.77 SS G_CDS: 2.13 Total: -62.64 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.24 Total: -42.48 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.27 Total: -8.72 kcal Total: -60.05 4.28 -55.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214579238.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.013 kcal (2) G-P(sol) polarization free energy of solvation -60.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds