Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28269 * 124.15029 * 2 1 4 4 C 1.32324 * 112.88797 * 180.02562 * 3 2 1 5 5 C 1.40828 * 135.16578 * 179.97438 * 4 3 2 6 6 C 1.36220 * 119.71741 * 180.02562 * 5 4 3 7 7 C 1.39003 * 121.83339 * 0.02562 * 6 5 4 8 8 C 1.38112 * 121.22808 * 0.02562 * 7 6 5 9 9 F 1.35101 * 120.33830 * 179.97438 * 8 7 6 10 10 C 1.39171 * 119.31888 * 359.97438 * 8 7 6 11 11 C 1.37409 * 124.15582 * 180.02562 * 2 1 3 12 12 C 1.39073 * 127.45394 * 0.23158 * 11 2 1 13 13 H 1.08005 * 119.99968 * 322.73154 * 12 11 2 14 14 C 1.40321 * 119.99829 * 142.72153 * 12 11 2 15 15 N 1.30705 * 120.00169 * 339.30929 * 14 12 11 16 16 Si 1.86806 * 119.99993 * 159.31366 * 14 12 11 17 17 H 1.48499 * 109.47311 * 89.99857 * 16 14 12 18 18 H 1.48502 * 109.46803 * 210.00173 * 16 14 12 19 19 H 1.48503 * 109.46518 * 329.99673 * 16 14 12 20 20 H 1.09009 * 109.46812 * 266.90541 * 1 2 3 21 21 H 1.09001 * 109.47506 * 26.90342 * 1 2 3 22 22 H 1.09000 * 109.46962 * 146.90660 * 1 2 3 23 23 H 1.08007 * 120.14256 * 0.05629 * 5 4 3 24 24 H 1.08003 * 119.08158 * 180.02562 * 6 5 4 25 25 H 1.08001 * 119.38454 * 179.97438 * 7 6 5 26 26 H 0.96994 * 119.99837 * 177.99578 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1851 1.0615 0.0000 4 6 3.4828 0.8031 -0.0005 5 6 4.6562 1.5818 -0.0012 6 6 5.8730 0.9696 -0.0022 7 6 5.9971 -0.4149 -0.0031 8 6 4.8848 -1.2336 -0.0035 9 9 5.0263 -2.5771 -0.0049 10 6 3.6167 -0.6602 -0.0025 11 6 2.2365 -1.1371 -0.0005 12 6 1.7977 -2.4568 -0.0056 13 1 0.9191 -2.7359 0.5572 14 6 2.4964 -3.4256 -0.7419 15 7 3.2832 -3.0613 -1.7200 16 14 2.3021 -5.2360 -0.3244 17 1 1.1789 -5.8074 -1.1100 18 1 3.5564 -5.9580 -0.6568 19 1 2.0165 -5.3815 1.1257 20 1 -0.3633 -0.0555 1.0263 21 1 -0.3634 0.9164 -0.4650 22 1 -0.3633 -0.8610 -0.5611 23 1 4.5916 2.6600 -0.0005 24 1 6.7662 1.5767 -0.0023 25 1 6.9817 -0.8587 -0.0042 26 1 3.7885 -3.7286 -2.2101 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219689933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = 18.820081 kcal Electronic energy + Delta-G solvation = -14735.177986 eV Core-core repulsion = 12114.784578 eV Total energy + Delta-G solvation = -2620.393409 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.41235 -42.04533 -37.80278 -35.87369 -33.05636 -31.85165 -30.18947 -28.23800 -26.77027 -23.55836 -22.85918 -21.21345 -19.25549 -18.19469 -17.59259 -16.73520 -16.58237 -16.41365 -15.87274 -15.69232 -15.57589 -14.38926 -13.79228 -13.64814 -13.50966 -13.48115 -13.08962 -12.72475 -12.42901 -12.15135 -11.94972 -11.79674 -11.27489 -10.66323 -10.19118 -9.19199 -8.96021 -8.36011 -6.49752 0.23089 1.13472 1.36413 1.40642 1.54314 1.88464 2.13547 2.31356 2.90935 3.26089 3.77013 3.81716 4.35354 4.44748 4.48532 4.62912 4.68318 4.70131 4.87459 5.02431 5.18182 5.45299 5.65273 5.68298 5.88633 6.09219 6.25666 6.50852 6.54812 6.85816 7.92744 8.12484 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.014943 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.713418 B = 1873.386538 C = 2757.894501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.346 5.346 3 N -0.426 5.426 4 C 0.093 3.907 5 C -0.178 4.178 6 C -0.043 4.043 7 C -0.289 4.289 8 C 0.203 3.797 9 F -0.149 7.149 10 C -0.313 4.313 11 C 0.239 3.761 12 C -0.467 4.467 13 H 0.108 0.892 14 C 0.055 3.945 15 N -0.784 5.784 16 Si 0.987 3.013 17 H -0.249 1.249 18 H -0.271 1.271 19 H -0.253 1.253 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.130 0.870 24 H 0.157 0.843 25 H 0.133 0.867 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -1.224 1.664 2.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.129 5.129 3 N -0.255 5.255 4 C -0.058 4.058 5 C -0.200 4.200 6 C -0.065 4.065 7 C -0.311 4.311 8 C 0.182 3.818 9 F -0.128 7.128 10 C -0.323 4.323 11 C 0.114 3.886 12 C -0.502 4.502 13 H 0.126 0.874 14 C -0.169 4.169 15 N -0.407 5.407 16 Si 0.806 3.194 17 H -0.173 1.173 18 H -0.195 1.195 19 H -0.177 1.177 20 H 0.096 0.904 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.147 0.853 24 H 0.175 0.825 25 H 0.151 0.849 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.530 -0.302 1.456 2.134 hybrid contribution 0.457 -1.519 -0.053 1.587 sum -1.073 -1.821 1.403 2.537 Atomic orbital electron populations 1.21897 0.73334 1.04701 1.03605 1.45879 1.07534 1.01993 1.57497 1.72584 1.02925 1.13351 1.36637 1.20745 0.91970 0.91972 1.01139 1.19831 0.89032 0.98561 1.12555 1.20392 0.97145 0.92960 0.95969 1.20590 0.96097 0.94459 1.19933 1.17131 0.92812 0.75722 0.96166 1.91337 1.96662 1.31671 1.93096 1.20594 0.92627 0.94920 1.24137 1.20095 0.87935 0.88496 0.92068 1.18802 1.14213 0.89730 1.27441 0.87421 1.26752 0.92150 1.06376 0.91600 1.69748 1.18138 1.39977 1.12856 0.85117 0.79281 0.74511 0.80479 1.17319 1.19514 1.17681 0.90358 0.88918 0.88939 0.85255 0.82523 0.84933 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.78 11.03 127.77 1.41 5.18 15 2 N -0.35 -17.16 3.74 -355.95 -1.33 -18.50 15 3 N -0.43 -22.42 11.79 -48.92 -0.58 -23.00 15 4 C 0.09 4.94 7.51 41.98 0.32 5.26 15 5 C -0.18 -7.89 10.09 22.43 0.23 -7.66 15 6 C -0.04 -1.70 9.89 21.98 0.22 -1.49 15 7 C -0.29 -12.72 9.98 22.42 0.22 -12.49 15 8 C 0.20 10.53 6.89 22.46 0.15 10.68 15 9 F -0.15 -7.74 14.19 44.97 0.64 -7.10 15 10 C -0.31 -17.37 5.97 -18.76 -0.11 -17.49 15 11 C 0.24 12.88 6.43 40.49 0.26 13.14 15 12 C -0.47 -23.30 8.61 22.98 0.20 -23.10 15 13 H 0.11 4.83 7.93 -2.91 -0.02 4.81 15 14 C 0.05 2.62 4.16 85.37 0.35 2.97 15 15 N -0.78 -40.18 10.66 21.90 0.23 -39.94 15 16 Si 0.99 35.96 29.61 68.60 2.03 37.99 15 17 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 20 H 0.08 2.45 8.14 -2.38 -0.02 2.43 15 21 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.09 3.10 7.80 -2.39 -0.02 3.08 15 23 H 0.13 4.97 8.06 -2.91 -0.02 4.95 15 24 H 0.16 4.57 8.06 -2.91 -0.02 4.55 15 25 H 0.13 5.01 8.06 -2.91 -0.02 4.99 15 26 H 0.30 13.92 8.29 -92.71 -0.77 13.15 15 Total: -1.00 -65.06 236.35 5.44 -59.61 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.20 Total: 15.91 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.25 Total: -24.98 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.67 Total: -81.43 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.64 Total: -7.10 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -65.06 5.44 -59.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219689933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.434 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds