Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30993 * 119.95715 * 2 1 4 4 C 1.34100 * 121.65808 * 180.27430 * 3 2 1 5 5 N 1.32794 * 131.95765 * 179.73649 * 4 3 2 6 6 C 1.32782 * 109.79032 * 179.97438 * 5 4 3 7 7 N 1.31016 * 109.62382 * 359.97438 * 6 5 4 8 8 N 1.36683 * 120.93170 * 359.72964 * 4 3 2 9 9 C 1.36076 * 120.46444 * 359.97438 * 8 4 3 10 10 O 1.34817 * 120.77844 * 180.02562 * 9 8 4 11 11 C 1.40881 * 118.43875 * 0.02562 * 9 8 4 12 12 C 1.41134 * 120.79269 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00144 * 217.18621 * 12 11 9 14 14 C 1.39764 * 119.99493 * 37.18472 * 12 11 9 15 15 N 1.31008 * 120.00039 * 24.74404 * 14 12 11 16 16 Si 1.86800 * 119.99632 * 204.74447 * 14 12 11 17 17 H 1.48503 * 109.47151 * 269.99904 * 16 14 12 18 18 H 1.48502 * 109.47486 * 29.99651 * 16 14 12 19 19 H 1.48492 * 109.47077 * 150.00038 * 16 14 12 20 20 H 1.09003 * 109.47049 * 270.28354 * 1 2 3 21 21 H 1.08999 * 109.46689 * 30.28264 * 1 2 3 22 22 H 1.08999 * 109.46826 * 150.27713 * 1 2 3 23 23 H 1.07998 * 125.18776 * 179.97438 * 6 5 4 24 24 H 0.96693 * 116.99682 * 274.34174 * 10 9 8 25 25 H 0.96996 * 120.00061 * 5.57754 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1611 1.1349 0.0000 4 6 3.5015 1.1747 -0.0055 5 7 4.3597 2.1882 -0.0111 6 6 5.6037 1.7239 -0.0145 7 7 5.5844 0.4139 -0.0107 8 7 4.2386 0.0237 -0.0057 9 6 3.6229 -1.1898 0.0001 10 8 4.3437 -2.3291 0.0004 11 6 2.2146 -1.2276 0.0058 12 6 1.5249 -2.4589 0.0125 13 1 0.6087 -2.5677 -0.5488 14 6 2.0277 -3.5374 0.7456 15 7 2.8098 -3.3224 1.7743 16 14 1.5844 -5.2854 0.2583 17 1 0.3481 -5.6991 0.9695 18 1 1.3565 -5.3481 -1.2077 19 1 2.6960 -6.1987 0.6260 20 1 -0.3633 0.0051 1.0277 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5095 23 1 6.4953 2.3332 -0.0197 24 1 4.6301 -2.6676 -0.8590 25 1 2.9750 -2.4158 2.0769 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226846556.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = 56.756587 kcal Electronic energy + Delta-G solvation = -14807.015433 eV Core-core repulsion = 12208.187037 eV Total energy + Delta-G solvation = -2598.828397 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.34350 -40.00444 -38.26335 -35.88131 -34.18718 -32.89368 -31.17395 -29.22396 -27.22674 -24.35392 -23.49783 -22.71323 -20.34769 -19.81054 -18.57466 -17.98646 -17.35921 -16.11386 -15.71045 -15.55471 -15.25436 -14.80545 -14.41769 -13.82581 -13.60837 -13.02816 -12.84373 -12.61824 -12.30413 -12.16526 -11.92486 -11.81812 -11.23201 -10.97198 -10.66063 -10.24217 -9.45643 -9.31994 -6.63646 -0.25616 0.18571 1.32207 1.58051 1.62590 1.84336 1.86702 2.34579 2.50391 2.61167 2.97180 3.16060 3.53330 3.97828 4.28883 4.43113 4.83983 4.86138 5.03631 5.23945 5.30615 5.39836 5.58661 5.65289 5.80175 6.11414 6.59382 6.68841 6.91520 7.27431 7.91430 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.037836 B = 0.011686 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.854267 B = 2395.524754 C = 2987.798043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.189 3.811 3 N -0.485 5.485 4 C 0.348 3.652 5 N -0.573 5.573 6 C 0.211 3.789 7 N -0.401 5.401 8 N -0.282 5.282 9 C 0.113 3.887 10 O -0.456 6.456 11 C -0.012 4.012 12 C -0.467 4.467 13 H 0.127 0.873 14 C 0.008 3.992 15 N -0.766 5.766 16 Si 1.123 2.877 17 H -0.256 1.256 18 H -0.252 1.252 19 H -0.286 1.286 20 H 0.095 0.905 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.261 0.739 24 H 0.378 0.622 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -2.748 -3.989 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.022 3.978 3 N -0.202 5.202 4 C -0.007 4.007 5 N -0.310 5.310 6 C -0.090 4.090 7 N -0.240 5.240 8 N -0.068 5.068 9 C -0.048 4.048 10 O -0.259 6.259 11 C -0.022 4.022 12 C -0.495 4.495 13 H 0.144 0.856 14 C -0.213 4.213 15 N -0.385 5.385 16 Si 0.939 3.061 17 H -0.180 1.180 18 H -0.175 1.175 19 H -0.212 1.212 20 H 0.113 0.887 21 H 0.107 0.893 22 H 0.124 0.876 23 H 0.276 0.724 24 H 0.236 0.764 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.321 -3.419 -2.973 6.261 hybrid contribution 0.955 1.089 -0.542 1.547 sum -3.365 -2.329 -3.514 5.395 Atomic orbital electron populations 1.20780 0.83709 1.05008 1.04575 1.23157 0.99342 0.85817 0.89452 1.67277 1.02208 1.30651 1.20054 1.22538 0.90182 0.82222 1.05766 1.70550 0.99860 1.27706 1.32856 1.26611 0.96379 0.89875 0.96105 1.78122 0.93211 1.15622 1.37020 1.49103 1.06921 1.08554 1.42264 1.19042 0.87798 0.76351 1.21580 1.84410 1.72078 1.34984 1.34388 1.18604 0.87221 0.96516 0.99848 1.20725 1.09888 0.93877 1.25034 0.85571 1.28524 0.90948 1.10097 0.91762 1.70528 1.22790 1.26370 1.18853 0.82916 0.77413 0.67724 0.78011 1.18015 1.17525 1.21195 0.88695 0.89311 0.87558 0.72392 0.76431 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.52 9.81 71.24 0.70 -1.82 15 2 C 0.19 8.07 6.88 43.54 0.30 8.37 15 3 N -0.48 -23.34 10.34 -184.41 -1.91 -25.25 15 4 C 0.35 18.07 8.98 261.48 2.35 20.42 15 5 N -0.57 -28.11 11.25 -203.26 -2.29 -30.40 15 6 C 0.21 9.05 12.98 180.82 2.35 11.40 15 7 N -0.40 -19.70 12.77 -61.35 -0.78 -20.49 15 8 N -0.28 -14.71 3.90 -306.40 -1.19 -15.90 15 9 C 0.11 5.70 6.98 84.68 0.59 6.29 15 10 O -0.46 -21.92 10.45 -80.83 -0.84 -22.76 15 11 C -0.01 -0.56 5.02 -21.07 -0.11 -0.66 15 12 C -0.47 -19.40 8.10 23.35 0.19 -19.21 15 13 H 0.13 4.45 6.72 -2.92 -0.02 4.43 15 14 C 0.01 0.33 4.30 85.18 0.37 0.70 15 15 N -0.77 -37.71 12.02 21.80 0.26 -37.45 15 16 Si 1.12 35.18 30.00 68.60 2.06 37.24 15 17 H -0.26 -7.27 7.11 99.48 0.71 -6.57 15 18 H -0.25 -7.00 7.11 99.48 0.71 -6.30 15 19 H -0.29 -9.67 7.11 99.48 0.71 -8.97 15 20 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.11 2.76 6.47 -2.39 -0.02 2.74 15 23 H 0.26 7.77 8.06 -2.91 -0.02 7.74 15 24 H 0.38 15.00 9.15 -74.06 -0.68 14.33 15 25 H 0.27 14.81 7.10 -92.71 -0.66 14.15 15 Total: -1.00 -65.73 228.89 2.73 -63.01 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.69 Total: 26.52 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 6.74 Total: 25.48 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -5.91 Total: -129.48 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.84 Total: -22.76 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.06 Total: 37.24 kcal Total: -65.73 2.73 -63.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226846556.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.763 kcal (2) G-P(sol) polarization free energy of solvation -65.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds