Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47330 * 300.00289 * 3 2 1 6 6 H 1.48502 * 109.47079 * 60.00143 * 3 2 1 7 7 C 1.38652 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00025 * 359.71750 * 7 2 1 10 10 C 1.35753 * 116.99880 * 174.90078 * 9 7 2 11 11 C 1.38898 * 120.10558 * 5.22062 * 10 9 7 12 12 C 1.37959 * 119.86234 * 179.80252 * 11 10 9 13 13 C 1.38583 * 120.31230 * 0.45001 * 12 11 10 14 14 C 1.38306 * 119.95468 * 359.80394 * 13 12 11 15 15 C 1.38374 * 119.91670 * 359.96982 * 14 13 12 16 16 C 1.51377 * 109.74918 * 179.97438 * 14 13 12 17 17 C 1.54341 * 105.17265 * 17.20483 * 16 14 13 18 18 C 1.51391 * 130.31295 * 179.76606 * 13 12 11 19 19 H 1.09001 * 110.29877 * 281.75013 * 18 13 12 20 20 O 1.42892 * 110.38474 * 43.86192 * 18 13 12 21 21 H 0.97009 * 119.99824 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.06978 * 0.02562 * 11 10 9 23 23 H 1.07999 * 119.84521 * 180.25276 * 12 11 10 24 24 H 1.07999 * 119.91270 * 179.97438 * 15 14 13 25 25 H 1.09000 * 110.30174 * 136.12463 * 16 14 13 26 26 H 1.08998 * 110.30407 * 258.27832 * 16 14 13 27 27 H 1.09004 * 110.81917 * 91.85050 * 17 16 14 28 28 H 1.09005 * 110.82148 * 215.39417 * 17 16 14 29 29 H 0.96702 * 114.00212 * 295.80215 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 0.0047 10 6 2.0694 -3.5047 -0.1037 11 6 3.4568 -3.4399 -0.1043 12 6 4.1986 -4.5983 -0.2105 13 6 3.5659 -5.8258 -0.3261 14 6 2.1845 -5.8930 -0.3311 15 6 1.4368 -4.7340 -0.2200 16 6 1.7430 -7.3345 -0.4677 17 6 2.9867 -8.1739 -0.1062 18 6 4.1459 -7.2179 -0.4592 19 1 4.4814 -7.3916 -1.4816 20 8 5.2301 -7.3949 0.4546 21 1 -0.4850 0.8401 0.0004 22 1 3.9540 -2.4850 -0.0181 23 1 5.2774 -4.5479 -0.2069 24 1 0.3581 -4.7865 -0.2243 25 1 0.9285 -7.5478 0.2246 26 1 1.4330 -7.5396 -1.4923 27 1 2.9946 -8.4169 0.9564 28 1 3.0328 -9.0789 -0.7120 29 1 5.9880 -6.8196 0.2818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232417874.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = -79.723181 kcal Electronic energy + Delta-G solvation = -14301.143301 eV Core-core repulsion = 11767.644290 eV Total energy + Delta-G solvation = -2533.499011 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27765 -39.60917 -37.06057 -35.12981 -34.19187 -31.66433 -29.28062 -27.91315 -26.61877 -23.65125 -22.16152 -21.54661 -19.56530 -18.65376 -18.32133 -16.98753 -16.46533 -16.19570 -15.61860 -15.45741 -15.25342 -14.35269 -14.25744 -13.70870 -13.59573 -13.30361 -13.09836 -12.77309 -12.56492 -12.50976 -12.12694 -12.08706 -11.60691 -11.21473 -10.90936 -10.76674 -9.67121 -8.92789 -8.49862 -6.18729 0.50112 0.60820 1.34039 1.42364 1.52766 2.15469 2.73969 3.08963 3.26605 3.41195 3.74188 3.84909 4.11037 4.16079 4.30137 4.48013 4.52713 4.70562 4.80163 4.80800 4.97913 5.08560 5.13788 5.28080 5.36569 5.53417 5.66418 5.72857 5.99303 6.14352 6.89011 6.94521 7.74077 8.73592 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.056372 B = 0.006648 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.579356 B = 4210.693341 C = 4652.604688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.119 3.881 11 C -0.246 4.246 12 C -0.050 4.050 13 C -0.220 4.220 14 C -0.054 4.054 15 C -0.199 4.199 16 C -0.076 4.076 17 C -0.105 4.105 18 C 0.160 3.840 19 H 0.085 0.915 20 O -0.575 6.575 21 H 0.273 0.727 22 H 0.124 0.876 23 H 0.145 0.855 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -11.996 -2.166 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.068 3.932 11 C -0.265 4.265 12 C -0.067 4.067 13 C -0.221 4.221 14 C -0.054 4.054 15 C -0.219 4.219 16 C -0.113 4.113 17 C -0.142 4.142 18 C 0.101 3.899 19 H 0.103 0.897 20 O -0.383 6.383 21 H 0.082 0.918 22 H 0.141 0.859 23 H 0.163 0.837 24 H 0.127 0.873 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.308 -12.275 -1.893 14.943 hybrid contribution 0.204 1.748 -0.120 1.764 sum 8.512 -10.527 -2.013 13.687 Atomic orbital electron populations 1.70198 1.08075 1.28823 1.48753 1.26632 0.96885 1.02785 0.95727 0.84496 0.78236 0.74627 0.78611 1.17387 1.19244 1.19300 1.21886 0.92573 0.81339 1.53367 0.88022 1.83936 1.35989 1.12541 1.81291 1.19747 0.91645 0.87786 0.93982 1.21180 0.93024 0.99933 1.12355 1.20515 1.00101 0.90133 0.95999 1.21335 0.94955 0.96447 1.09386 1.20505 0.94255 0.94962 0.95691 1.19800 0.99555 0.89927 1.12597 1.21129 0.98864 0.87706 1.03602 1.22363 0.90941 0.97759 1.03162 1.21248 0.87114 0.88431 0.93070 0.89706 1.86463 1.28866 1.65751 1.57186 0.91763 0.85868 0.83742 0.87253 0.89670 0.88047 0.90684 0.87080 0.75995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.97 13.67 21.61 0.30 -56.67 15 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 15 3 Si 1.02 43.02 29.55 68.60 2.03 45.05 15 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.42 -24.55 9.49 67.92 0.64 -23.91 15 8 H 0.10 5.51 5.21 -2.91 -0.02 5.49 15 9 O -0.23 -14.23 9.76 -22.70 -0.22 -14.46 15 10 C 0.12 6.14 6.64 22.55 0.15 6.29 15 11 C -0.25 -10.99 9.17 22.36 0.20 -10.79 15 12 C -0.05 -1.75 10.00 22.29 0.22 -1.53 15 13 C -0.22 -7.25 5.83 -19.55 -0.11 -7.36 15 14 C -0.05 -1.92 6.13 -19.60 -0.12 -2.04 15 15 C -0.20 -8.97 9.99 22.42 0.22 -8.75 15 16 C -0.08 -1.89 6.77 30.52 0.21 -1.69 15 17 C -0.11 -2.24 6.80 31.51 0.21 -2.02 15 18 C 0.16 3.88 4.22 30.52 0.13 4.01 15 19 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 20 O -0.57 -13.63 13.35 -148.98 -1.99 -15.62 15 21 H 0.27 15.40 8.31 -92.70 -0.77 14.63 15 22 H 0.12 5.53 5.64 -2.91 -0.02 5.51 15 23 H 0.14 3.86 8.06 -2.91 -0.02 3.83 15 24 H 0.11 4.89 8.06 -2.91 -0.02 4.86 15 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.07 1.71 8.11 -2.39 -0.02 1.69 15 28 H 0.11 1.65 8.14 -2.38 -0.02 1.63 15 29 H 0.39 6.33 9.10 -74.06 -0.67 5.65 15 Total: -1.00 -73.33 253.23 2.84 -70.49 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.50 Total: 19.85 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 2.23 Total: -48.64 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.30 Total: -56.67 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -2.21 Total: -30.08 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.33 2.84 -70.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232417874.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.236 kcal (2) G-P(sol) polarization free energy of solvation -73.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds