Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86795 * 119.99713 * 2 1 4 4 H 1.48501 * 109.47680 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47510 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46994 * 120.00120 * 3 2 1 7 7 C 1.38637 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00045 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99841 * 0.26768 * 7 2 1 10 10 C 1.35806 * 116.99715 * 174.67208 * 9 7 2 11 11 C 1.38751 * 120.09467 * 5.53388 * 10 9 7 12 12 C 1.38152 * 119.98735 * 179.74905 * 11 10 9 13 13 C 1.38328 * 120.16980 * 0.55421 * 12 11 10 14 14 C 1.38229 * 120.18357 * 359.70071 * 13 12 11 15 15 C 1.38575 * 120.01285 * 0.02562 * 14 13 12 16 16 O 1.35941 * 120.08584 * 179.97438 * 15 14 13 17 17 C 1.42902 * 116.99930 * 6.08691 * 16 15 14 18 18 C 1.53002 * 117.49692 * 214.41735 * 17 16 15 19 19 C 1.53005 * 117.49805 * 145.76065 * 17 16 15 20 20 H 0.96999 * 119.99941 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.00262 * 0.02562 * 11 10 9 22 22 H 1.08006 * 119.91602 * 180.30086 * 12 11 10 23 23 H 1.08001 * 119.90922 * 179.72277 * 13 12 11 24 24 H 1.07999 * 119.99710 * 180.02562 * 14 13 12 25 25 H 1.08995 * 115.55007 * 0.08563 * 17 16 15 26 26 H 1.09000 * 117.49604 * 359.97438 * 18 17 16 27 27 H 1.09002 * 117.50009 * 145.02180 * 18 17 16 28 28 H 1.09007 * 117.49518 * 214.97428 * 19 17 16 29 29 H 1.08995 * 117.49765 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0065 10 6 2.0706 -3.5041 -0.1191 11 6 3.4565 -3.4396 -0.1059 12 6 4.2027 -4.5972 -0.2154 13 6 3.5718 -5.8209 -0.3497 14 6 2.1915 -5.8927 -0.3689 15 6 1.4356 -4.7370 -0.2540 16 8 0.0780 -4.8059 -0.2733 17 6 -0.5053 -6.1104 -0.2799 18 6 -1.8047 -6.2993 -1.0653 19 6 -1.8287 -6.2963 0.4652 20 1 -0.4850 0.8400 0.0004 21 1 3.9519 -2.4851 -0.0057 22 1 5.2814 -4.5461 -0.2001 23 1 4.1593 -6.7227 -0.4394 24 1 1.7020 -6.8497 -0.4735 25 1 0.2004 -6.9410 -0.2673 26 1 -2.2147 -5.4283 -1.5766 27 1 -1.9540 -7.2543 -1.5691 28 1 -1.9937 -7.2495 0.9677 29 1 -2.2541 -5.4237 0.9608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238547581.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = 0.185407 kcal Electronic energy + Delta-G solvation = -14373.434756 eV Core-core repulsion = 11843.400841 eV Total energy + Delta-G solvation = -2530.033915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61108 -37.93729 -36.17486 -34.67138 -32.23328 -29.43233 -28.52032 -25.34182 -23.19779 -22.23657 -21.42365 -20.51404 -18.20009 -17.81659 -16.33245 -15.25773 -14.67864 -14.54245 -14.43265 -13.89807 -13.85544 -13.42040 -13.00742 -12.45590 -11.73286 -11.62615 -11.37331 -11.22721 -11.00200 -10.83211 -10.63777 -10.43137 -10.09123 -9.60943 -9.41136 -8.80037 -7.85355 -6.93245 -6.39105 -3.96558 2.12917 2.34209 3.15660 3.17172 3.19824 3.67847 3.99410 4.01597 4.56995 4.86957 5.09396 5.14998 5.22477 5.31119 5.57601 5.58893 5.75745 5.77977 5.99024 6.09834 6.28916 6.31503 6.45212 6.63539 6.98760 7.11128 7.26834 7.37109 7.64463 8.00788 8.21222 9.04911 9.76128 10.78322 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.009039 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.696979 B = 3096.847694 C = 4056.252483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.165 6.165 10 C 0.132 3.868 11 C -0.211 4.211 12 C -0.104 4.104 13 C -0.180 4.180 14 C -0.170 4.170 15 C 0.058 3.942 16 O -0.267 6.267 17 C 0.007 3.993 18 C -0.184 4.184 19 C -0.184 4.184 20 H 0.270 0.730 21 H 0.134 0.866 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -9.693 -0.560 9.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.069 6.069 10 C 0.078 3.922 11 C -0.230 4.230 12 C -0.122 4.122 13 C -0.199 4.199 14 C -0.188 4.188 15 C 0.013 3.987 16 O -0.181 6.181 17 C -0.050 4.050 18 C -0.221 4.221 19 C -0.221 4.221 20 H 0.080 0.920 21 H 0.151 0.849 22 H 0.127 0.873 23 H 0.126 0.874 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.223 -9.292 -0.538 9.388 hybrid contribution 0.580 0.589 -0.015 0.826 sum 1.803 -8.703 -0.553 8.905 Atomic orbital electron populations 1.70066 1.05945 1.27654 1.45656 1.25288 0.95827 0.98768 0.96634 0.85790 0.78689 0.79822 0.79153 1.19505 1.20299 1.19509 1.21300 0.91755 0.80967 1.52858 0.89160 1.84073 1.33474 1.10952 1.78406 1.18676 0.89975 0.86489 0.97044 1.20952 0.92362 0.99342 1.10364 1.20689 0.98594 0.92265 1.00658 1.20369 0.93356 0.97122 1.09043 1.20707 0.94632 0.96015 1.07495 1.18159 0.81784 0.92217 1.06506 1.86197 1.17559 1.25814 1.88537 1.22918 0.89692 0.87040 1.05343 1.23368 1.00835 1.03370 0.94512 1.23372 1.00530 1.03426 0.94764 0.92027 0.84879 0.87274 0.87381 0.86199 0.86308 0.87893 0.88276 0.88273 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.67 55.48 0.76 -25.11 15 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 15 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.39 -11.26 9.49 30.88 0.29 -10.97 15 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 15 9 O -0.17 -4.95 9.54 -14.50 -0.14 -5.09 15 10 C 0.13 3.37 6.66 -38.98 -0.26 3.11 15 11 C -0.21 -4.71 9.16 -39.42 -0.36 -5.07 15 12 C -0.10 -1.95 10.04 -39.58 -0.40 -2.35 15 13 C -0.18 -3.19 10.04 -39.55 -0.40 -3.59 15 14 C -0.17 -3.20 9.16 -39.46 -0.36 -3.56 15 15 C 0.06 1.33 6.70 -39.05 -0.26 1.07 15 16 O -0.27 -6.11 10.18 -33.99 -0.35 -6.46 15 17 C 0.01 0.12 6.23 -26.73 -0.17 -0.04 15 18 C -0.18 -2.58 10.48 -26.69 -0.28 -2.86 15 19 C -0.18 -2.61 10.48 -26.69 -0.28 -2.89 15 20 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.13 2.91 5.64 -52.48 -0.30 2.62 15 22 H 0.11 1.70 8.06 -52.48 -0.42 1.28 15 23 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 24 H 0.12 1.85 5.55 -52.49 -0.29 1.56 15 25 H 0.12 1.70 5.31 -51.93 -0.28 1.42 15 26 H 0.10 1.57 8.14 -51.93 -0.42 1.15 15 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.10 1.11 8.14 -51.92 -0.42 0.69 15 29 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 256.89 15.07 3.87 3.87 Total: -1.00 -32.30 256.89 -6.25 -38.55 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -2.81 Total: 4.57 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.57 Total: -26.14 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.76 Total: -25.11 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.48 Total: -11.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.30 -6.25 -38.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547581.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.736 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds