Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86795 * 119.99713 * 2 1 4 4 H 1.48501 * 109.47680 * 240.00261 * 3 2 1 5 5 H 1.48501 * 109.47510 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46994 * 120.00120 * 3 2 1 7 7 C 1.38637 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00045 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99841 * 0.26768 * 7 2 1 10 10 C 1.35806 * 116.99715 * 174.67208 * 9 7 2 11 11 C 1.38751 * 120.09467 * 5.53388 * 10 9 7 12 12 C 1.38152 * 119.98735 * 179.74905 * 11 10 9 13 13 C 1.38328 * 120.16980 * 0.55421 * 12 11 10 14 14 C 1.38229 * 120.18357 * 359.70071 * 13 12 11 15 15 C 1.38575 * 120.01285 * 0.02562 * 14 13 12 16 16 O 1.35941 * 120.08584 * 179.97438 * 15 14 13 17 17 C 1.42902 * 116.99930 * 6.08691 * 16 15 14 18 18 C 1.53002 * 117.49692 * 214.41735 * 17 16 15 19 19 C 1.53005 * 117.49805 * 145.76065 * 17 16 15 20 20 H 0.96999 * 119.99941 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.00262 * 0.02562 * 11 10 9 22 22 H 1.08006 * 119.91602 * 180.30086 * 12 11 10 23 23 H 1.08001 * 119.90922 * 179.72277 * 13 12 11 24 24 H 1.07999 * 119.99710 * 180.02562 * 14 13 12 25 25 H 1.08995 * 115.55007 * 0.08563 * 17 16 15 26 26 H 1.09000 * 117.49604 * 359.97438 * 18 17 16 27 27 H 1.09002 * 117.50009 * 145.02180 * 18 17 16 28 28 H 1.09007 * 117.49518 * 214.97428 * 19 17 16 29 29 H 1.08995 * 117.49765 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0065 10 6 2.0706 -3.5041 -0.1191 11 6 3.4565 -3.4396 -0.1059 12 6 4.2027 -4.5972 -0.2154 13 6 3.5718 -5.8209 -0.3497 14 6 2.1915 -5.8927 -0.3689 15 6 1.4356 -4.7370 -0.2540 16 8 0.0780 -4.8059 -0.2733 17 6 -0.5053 -6.1104 -0.2799 18 6 -1.8047 -6.2993 -1.0653 19 6 -1.8287 -6.2963 0.4652 20 1 -0.4850 0.8400 0.0004 21 1 3.9519 -2.4851 -0.0057 22 1 5.2814 -4.5461 -0.2001 23 1 4.1593 -6.7227 -0.4394 24 1 1.7020 -6.8497 -0.4735 25 1 0.2004 -6.9410 -0.2673 26 1 -2.2147 -5.4283 -1.5766 27 1 -1.9540 -7.2543 -1.5691 28 1 -1.9937 -7.2495 0.9677 29 1 -2.2541 -5.4237 0.9608 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238547581.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = -20.926581 kcal Electronic energy + Delta-G solvation = -14374.350241 eV Core-core repulsion = 11843.400841 eV Total energy + Delta-G solvation = -2530.949399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24999 -39.58284 -37.84058 -36.05628 -34.26994 -31.06333 -30.21558 -27.35189 -24.70228 -23.36564 -23.07239 -22.03680 -19.87643 -19.64137 -18.06472 -16.86944 -16.34136 -16.14724 -15.94635 -15.49945 -15.47006 -14.84826 -14.82687 -14.18446 -13.53908 -13.21704 -12.90147 -12.58965 -12.48052 -12.45992 -12.21990 -12.01719 -11.34410 -11.31296 -10.93356 -10.78540 -9.47801 -8.66947 -8.44325 -6.11680 0.50901 0.70439 1.34052 1.45967 1.51395 2.18449 2.28942 2.75864 2.89697 3.16439 3.41838 3.70108 3.99449 4.04179 4.15517 4.24535 4.29157 4.56311 4.68596 4.72045 4.86036 4.96626 5.02914 5.13888 5.18952 5.47562 5.57654 5.73465 5.97985 6.08436 6.67397 6.98978 7.83020 8.79018 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.009039 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.696979 B = 3096.847694 C = 4056.252483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.227 6.227 10 C 0.075 3.925 11 C -0.214 4.214 12 C -0.106 4.106 13 C -0.150 4.150 14 C -0.164 4.164 15 C 0.041 3.959 16 O -0.314 6.314 17 C -0.026 4.026 18 C -0.171 4.171 19 C -0.176 4.176 20 H 0.271 0.729 21 H 0.127 0.873 22 H 0.151 0.849 23 H 0.161 0.839 24 H 0.161 0.839 25 H 0.149 0.851 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -12.526 -0.847 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.840 3.160 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.135 6.135 10 C 0.025 3.975 11 C -0.233 4.233 12 C -0.124 4.124 13 C -0.168 4.168 14 C -0.182 4.182 15 C -0.004 4.004 16 O -0.229 6.229 17 C -0.082 4.082 18 C -0.208 4.208 19 C -0.213 4.213 20 H 0.080 0.920 21 H 0.144 0.856 22 H 0.168 0.832 23 H 0.179 0.821 24 H 0.178 0.822 25 H 0.166 0.834 26 H 0.098 0.902 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.495 -12.193 -0.827 12.711 hybrid contribution -0.029 1.062 0.048 1.063 sum 3.466 -11.131 -0.779 11.684 Atomic orbital electron populations 1.70238 1.08215 1.28693 1.49014 1.26667 0.96849 1.02890 0.95959 0.84615 0.77323 0.73992 0.80023 1.18024 1.19714 1.17939 1.21856 0.92587 0.81619 1.53087 0.87959 1.84034 1.35279 1.12220 1.81937 1.19437 0.91675 0.86606 0.99803 1.21167 0.91491 1.00860 1.09806 1.21165 1.00551 0.91275 0.99427 1.21072 0.93161 0.98517 1.04051 1.21229 0.95270 0.96119 1.05571 1.18592 0.82520 0.92684 1.06592 1.86131 1.17961 1.29901 1.88887 1.23482 0.90997 0.85495 1.08254 1.23480 0.98376 1.04392 0.94575 1.23481 0.98341 1.04288 0.95170 0.91995 0.85565 0.83153 0.82140 0.82203 0.83377 0.90211 0.84122 0.84261 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.56 13.67 21.61 0.30 -59.26 15 2 C -0.03 -1.59 5.49 84.83 0.47 -1.12 15 3 Si 1.02 44.31 29.55 68.60 2.03 46.34 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 7 C -0.42 -25.35 9.49 67.92 0.64 -24.71 15 8 H 0.10 5.64 5.21 -2.91 -0.02 5.62 15 9 O -0.23 -14.68 9.54 -9.36 -0.09 -14.77 15 10 C 0.07 4.00 6.66 22.66 0.15 4.15 15 11 C -0.21 -9.60 9.16 22.37 0.21 -9.39 15 12 C -0.11 -3.61 10.04 22.27 0.22 -3.39 15 13 C -0.15 -4.52 10.04 22.29 0.22 -4.30 15 14 C -0.16 -5.61 9.16 22.35 0.20 -5.41 15 15 C 0.04 1.89 6.70 22.62 0.15 2.04 15 16 O -0.31 -14.91 10.18 -79.09 -0.80 -15.72 15 17 C -0.03 -0.85 6.23 30.60 0.19 -0.66 15 18 C -0.17 -4.57 10.48 30.62 0.32 -4.25 15 19 C -0.18 -4.79 10.48 30.62 0.32 -4.46 15 20 H 0.27 16.01 8.31 -92.71 -0.77 15.24 15 21 H 0.13 5.67 5.64 -2.91 -0.02 5.65 15 22 H 0.15 3.89 8.06 -2.91 -0.02 3.86 15 23 H 0.16 3.32 8.06 -2.91 -0.02 3.30 15 24 H 0.16 4.11 5.55 -2.91 -0.02 4.09 15 25 H 0.15 3.69 5.31 -2.39 -0.01 3.68 15 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 27 H 0.14 2.56 8.14 -2.39 -0.02 2.54 15 28 H 0.14 2.63 8.14 -2.38 -0.02 2.61 15 29 H 0.08 2.51 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -78.95 256.89 5.70 -73.26 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.17 Total: 21.66 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 3.10 Total: -51.51 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.30 Total: -59.26 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.89 Total: -30.48 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.95 5.70 -73.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547581.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.332 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds