Wall clock time and date at job start Mon Mar 30 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48497 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47203 * 299.99686 * 3 2 1 6 6 H 1.48500 * 109.47037 * 60.00021 * 3 2 1 7 7 C 1.38631 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.35799 * 116.99840 * 185.04888 * 9 7 2 11 11 C 1.38880 * 120.01351 * 354.52452 * 10 9 7 12 12 C 1.38047 * 119.98407 * 180.02562 * 11 10 9 13 13 C 1.38772 * 120.01563 * 359.97438 * 12 11 10 14 14 O 1.35937 * 119.98413 * 179.97438 * 13 12 11 15 15 C 1.42895 * 117.00528 * 5.98701 * 14 13 12 16 16 C 1.53003 * 117.50173 * 214.34890 * 15 14 13 17 17 C 1.52998 * 117.50456 * 145.68426 * 15 14 13 18 18 C 1.38767 * 120.02738 * 0.02562 * 13 12 11 19 19 C 1.38054 * 120.01086 * 359.97438 * 18 13 12 20 20 H 0.96998 * 119.99774 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.00461 * 0.02562 * 11 10 9 22 22 H 1.08006 * 119.99187 * 179.72122 * 12 11 10 23 23 H 1.09004 * 115.54841 * 0.02562 * 15 14 13 24 24 H 1.09000 * 117.49344 * 359.97438 * 16 15 14 25 25 H 1.08991 * 117.50140 * 145.01997 * 16 15 14 26 26 H 1.09000 * 117.50387 * 214.97720 * 17 15 14 27 27 H 1.09008 * 117.49510 * 359.97438 * 17 15 14 28 28 H 1.07996 * 119.99339 * 180.02562 * 18 13 12 29 29 H 1.08001 * 120.00470 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5046 0.1076 11 6 3.4574 -3.4381 0.0961 12 6 4.2045 -4.5939 0.2044 13 6 3.5697 -5.8220 0.3252 14 8 4.3060 -6.9597 0.4313 15 6 5.7224 -6.8079 0.5438 16 6 6.6017 -7.8759 -0.1098 17 6 6.4743 -7.8166 1.4145 18 6 2.1838 -5.8891 0.3368 19 6 1.4355 -4.7340 0.2285 20 1 -0.4850 0.8400 -0.0004 21 1 3.9515 -2.4823 0.0024 22 1 5.2833 -4.5427 0.1909 23 1 6.0873 -5.7808 0.5346 24 1 6.0996 -8.6946 -0.6254 25 1 7.5451 -7.5516 -0.5489 26 1 7.3340 -7.4534 1.9775 27 1 5.8883 -8.5960 1.9019 28 1 1.6903 -6.8451 0.4313 29 1 0.3568 -4.7863 0.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238547840.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:01 Heat of formation + Delta-G solvation = -2.910637 kcal Electronic energy + Delta-G solvation = -13991.830920 eV Core-core repulsion = 11461.662751 eV Total energy + Delta-G solvation = -2530.168169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66640 -38.32693 -36.27729 -34.51349 -32.18699 -30.35363 -27.98665 -25.28836 -23.43001 -22.50154 -21.63161 -20.45964 -18.18244 -18.01485 -16.70212 -15.38221 -14.78046 -14.53437 -14.45361 -13.98108 -13.87447 -13.42492 -12.99637 -12.67359 -12.11490 -11.65139 -11.57374 -11.41704 -11.25849 -10.85938 -10.68715 -10.46187 -10.33439 -9.61117 -9.30719 -8.72616 -8.32904 -6.89319 -6.43044 -4.01358 2.05544 2.32119 3.12368 3.13966 3.19421 3.43446 3.77173 3.97620 4.52575 4.69860 4.88605 5.09359 5.10007 5.27453 5.34556 5.51038 5.56975 5.64819 5.79046 6.00580 6.10171 6.27205 6.34702 6.70172 6.94787 7.01213 7.19638 7.36176 7.50627 8.00763 8.04719 9.02574 9.73138 10.75305 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050879 B = 0.005922 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.194974 B = 4727.373091 C = 5195.701407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.128 3.872 11 C -0.198 4.198 12 C -0.155 4.155 13 C 0.029 3.971 14 O -0.291 6.291 15 C 0.012 3.988 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.101 4.101 19 C -0.156 4.156 20 H 0.269 0.731 21 H 0.131 0.869 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -9.405 0.988 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.085 6.085 10 C 0.075 3.925 11 C -0.218 4.218 12 C -0.173 4.173 13 C -0.014 4.014 14 O -0.206 6.206 15 C -0.045 4.045 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.120 4.120 19 C -0.176 4.176 20 H 0.079 0.921 21 H 0.149 0.851 22 H 0.134 0.866 23 H 0.140 0.860 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.776 -9.380 0.967 13.582 hybrid contribution 0.716 0.969 -0.006 1.205 sum 10.492 -8.411 0.961 13.481 Atomic orbital electron populations 1.70055 1.05908 1.27464 1.46514 1.25265 0.95841 0.98757 0.96700 0.85659 0.79080 0.80503 0.78237 1.19183 1.20174 1.20170 1.21328 0.91723 0.80930 1.52792 0.89193 1.83996 1.33953 1.11226 1.79284 1.19325 0.90163 0.88333 0.94693 1.21009 0.93746 0.98388 1.08638 1.20847 0.98960 0.92042 1.05454 1.18519 0.90824 0.84645 1.07417 1.85908 1.16135 1.29721 1.88863 1.22900 0.80387 0.96497 1.04711 1.23377 1.01067 1.02155 0.95595 1.23381 1.02332 1.02821 0.93687 1.19929 0.90118 0.97966 1.03943 1.20057 0.99622 0.89530 1.08363 0.92125 0.85137 0.86560 0.86004 0.88142 0.88099 0.88098 0.88148 0.86088 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.67 55.48 0.76 -24.66 15 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 15 3 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 7 C -0.39 -10.95 9.48 30.88 0.29 -10.66 15 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 15 9 O -0.18 -5.16 9.76 -0.06 0.00 -5.16 15 10 C 0.13 3.10 6.65 -39.11 -0.26 2.84 15 11 C -0.20 -4.35 9.16 -39.41 -0.36 -4.71 15 12 C -0.15 -2.93 9.16 -39.45 -0.36 -3.29 15 13 C 0.03 0.56 6.68 -39.19 -0.26 0.29 15 14 O -0.29 -5.00 10.39 -19.54 -0.20 -5.20 15 15 C 0.01 0.17 6.22 -26.73 -0.17 0.00 15 16 C -0.18 -1.98 10.48 -26.69 -0.28 -2.26 15 17 C -0.19 -1.99 10.48 -26.69 -0.28 -2.27 15 18 C -0.10 -1.92 9.98 -39.45 -0.39 -2.32 15 19 C -0.16 -3.34 9.99 -39.41 -0.39 -3.73 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.13 2.83 5.63 -52.49 -0.30 2.53 15 22 H 0.12 1.84 5.54 -52.48 -0.29 1.55 15 23 H 0.12 1.56 5.30 -51.93 -0.28 1.28 15 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.46 15 27 H 0.10 1.08 8.14 -51.92 -0.42 0.66 15 28 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 29 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 257.14 15.07 3.88 3.88 Total: -1.00 -30.79 257.14 -5.96 -36.75 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.81 Total: 4.03 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -2.56 Total: -25.15 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.20 Total: -10.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.79 -5.96 -36.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547840.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.843 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds