Wall clock time and date at job start Mon Mar 30 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48497 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47203 * 299.99686 * 3 2 1 6 6 H 1.48500 * 109.47037 * 60.00021 * 3 2 1 7 7 C 1.38631 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.35799 * 116.99840 * 185.04888 * 9 7 2 11 11 C 1.38880 * 120.01351 * 354.52452 * 10 9 7 12 12 C 1.38047 * 119.98407 * 180.02562 * 11 10 9 13 13 C 1.38772 * 120.01563 * 359.97438 * 12 11 10 14 14 O 1.35937 * 119.98413 * 179.97438 * 13 12 11 15 15 C 1.42895 * 117.00528 * 5.98701 * 14 13 12 16 16 C 1.53003 * 117.50173 * 214.34890 * 15 14 13 17 17 C 1.52998 * 117.50456 * 145.68426 * 15 14 13 18 18 C 1.38767 * 120.02738 * 0.02562 * 13 12 11 19 19 C 1.38054 * 120.01086 * 359.97438 * 18 13 12 20 20 H 0.96998 * 119.99774 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.00461 * 0.02562 * 11 10 9 22 22 H 1.08006 * 119.99187 * 179.72122 * 12 11 10 23 23 H 1.09004 * 115.54841 * 0.02562 * 15 14 13 24 24 H 1.09000 * 117.49344 * 359.97438 * 16 15 14 25 25 H 1.08991 * 117.50140 * 145.01997 * 16 15 14 26 26 H 1.09000 * 117.50387 * 214.97720 * 17 15 14 27 27 H 1.09008 * 117.49510 * 359.97438 * 17 15 14 28 28 H 1.07996 * 119.99339 * 180.02562 * 18 13 12 29 29 H 1.08001 * 120.00470 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5046 0.1076 11 6 3.4574 -3.4381 0.0961 12 6 4.2045 -4.5939 0.2044 13 6 3.5697 -5.8220 0.3252 14 8 4.3060 -6.9597 0.4313 15 6 5.7224 -6.8079 0.5438 16 6 6.6017 -7.8759 -0.1098 17 6 6.4743 -7.8166 1.4145 18 6 2.1838 -5.8891 0.3368 19 6 1.4355 -4.7340 0.2285 20 1 -0.4850 0.8400 -0.0004 21 1 3.9515 -2.4823 0.0024 22 1 5.2833 -4.5427 0.1909 23 1 6.0873 -5.7808 0.5346 24 1 6.0996 -8.6946 -0.6254 25 1 7.5451 -7.5516 -0.5489 26 1 7.3340 -7.4534 1.9775 27 1 5.8883 -8.5960 1.9019 28 1 1.6903 -6.8451 0.4313 29 1 0.3568 -4.7863 0.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238547840.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:00 Heat of formation + Delta-G solvation = -22.061427 kcal Electronic energy + Delta-G solvation = -13992.661361 eV Core-core repulsion = 11461.662751 eV Total energy + Delta-G solvation = -2530.998610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18459 -39.91887 -37.74072 -35.81540 -34.18293 -31.98801 -29.65687 -27.27936 -24.80549 -23.32166 -23.28315 -21.82533 -19.91505 -19.62187 -18.40720 -16.85640 -16.25813 -16.01911 -15.90224 -15.50467 -15.23590 -15.22583 -14.68951 -14.25850 -13.62919 -13.22499 -13.08372 -12.93313 -12.43822 -12.38788 -12.20335 -12.08888 -11.46663 -11.07608 -10.95471 -10.53400 -9.95110 -8.58622 -8.44739 -6.11809 0.41736 0.66511 1.36501 1.44526 1.54686 2.17547 2.22421 2.73093 2.92227 3.14738 3.51793 3.65949 3.96258 4.02829 4.05568 4.14419 4.37362 4.45117 4.71715 4.74120 4.85670 4.99400 5.06907 5.12958 5.21596 5.35974 5.45746 5.63071 5.85171 6.02947 6.61296 6.99819 7.80685 8.78704 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050879 B = 0.005922 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.194974 B = 4727.373091 C = 5195.701407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.085 3.915 11 C -0.201 4.201 12 C -0.153 4.153 13 C 0.051 3.949 14 O -0.299 6.299 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.102 4.102 19 C -0.159 4.159 20 H 0.272 0.728 21 H 0.128 0.872 22 H 0.152 0.848 23 H 0.129 0.871 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 -10.700 1.225 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.139 6.139 10 C 0.035 3.965 11 C -0.221 4.221 12 C -0.171 4.171 13 C 0.006 3.994 14 O -0.214 6.214 15 C -0.086 4.086 16 C -0.206 4.206 17 C -0.207 4.207 18 C -0.121 4.121 19 C -0.179 4.179 20 H 0.081 0.919 21 H 0.146 0.854 22 H 0.169 0.831 23 H 0.147 0.853 24 H 0.117 0.883 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.169 0.831 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.760 -10.740 1.207 16.722 hybrid contribution -0.028 0.977 -0.051 0.979 sum 12.732 -9.763 1.155 16.085 Atomic orbital electron populations 1.70201 1.08016 1.28657 1.49194 1.26574 0.96854 1.02703 0.96006 0.84526 0.78283 0.74887 0.78486 1.17364 1.19429 1.19454 1.21850 0.92524 0.81497 1.52996 0.88057 1.83958 1.35547 1.12337 1.82102 1.19836 0.91483 0.88201 0.96936 1.21105 0.93003 0.99486 1.08468 1.21148 1.00683 0.90961 1.04332 1.18691 0.91120 0.85342 1.04212 1.85906 1.18401 1.28583 1.88520 1.23350 0.78524 0.98093 1.08633 1.23508 1.00938 1.00384 0.95812 1.23512 1.02032 1.01129 0.94076 1.20223 0.90580 0.98274 1.02976 1.20267 1.00210 0.89471 1.07920 0.91905 0.85433 0.83062 0.85338 0.88275 0.85681 0.85730 0.88283 0.83128 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.75 13.67 21.61 0.30 -56.45 15 2 C -0.02 -1.38 5.49 84.82 0.47 -0.91 15 3 Si 1.02 42.73 29.55 68.60 2.03 44.76 15 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 15 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 7 C -0.41 -23.99 9.48 67.91 0.64 -23.35 15 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 15 9 O -0.23 -13.99 9.76 -23.13 -0.23 -14.22 15 10 C 0.09 4.27 6.65 22.58 0.15 4.42 15 11 C -0.20 -8.83 9.16 22.38 0.21 -8.62 15 12 C -0.15 -5.50 9.16 22.35 0.20 -5.30 15 13 C 0.05 1.80 6.68 22.52 0.15 1.95 15 14 O -0.30 -9.35 10.39 -92.84 -0.96 -10.31 15 15 C -0.03 -0.70 6.22 30.59 0.19 -0.51 15 16 C -0.17 -2.93 10.48 30.62 0.32 -2.61 15 17 C -0.17 -2.97 10.48 30.62 0.32 -2.65 15 18 C -0.10 -3.74 9.98 22.35 0.22 -3.52 15 19 C -0.16 -6.90 9.99 22.38 0.22 -6.68 15 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 21 H 0.13 5.57 5.63 -2.91 -0.02 5.55 15 22 H 0.15 4.30 5.54 -2.91 -0.02 4.28 15 23 H 0.13 2.78 5.30 -2.38 -0.01 2.77 15 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.13 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.12 1.60 8.14 -2.39 -0.02 1.58 15 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 15 28 H 0.15 4.56 8.06 -2.91 -0.02 4.54 15 29 H 0.13 5.34 8.06 -2.91 -0.02 5.32 15 Total: -1.00 -69.64 257.14 5.40 -64.24 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.17 Total: 19.75 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 3.10 Total: -47.77 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.30 Total: -56.45 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.19 Total: -24.53 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.64 5.40 -64.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547840.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.178 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds