Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48496 * 109.47437 * 270.00622 * 3 2 1 5 5 H 1.48500 * 109.46933 * 30.00395 * 3 2 1 6 6 H 1.48500 * 109.46959 * 150.00146 * 3 2 1 7 7 C 1.38648 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.35749 * 117.00189 * 174.92821 * 9 7 2 11 11 C 1.38938 * 120.03945 * 5.71956 * 10 9 7 12 12 C 1.38105 * 120.03945 * 179.97438 * 11 10 9 13 13 C 1.38230 * 120.12751 * 359.78993 * 12 11 10 14 14 C 1.38790 * 120.07686 * 0.46900 * 13 12 11 15 15 O 1.35896 * 120.01851 * 179.78509 * 14 13 12 16 16 C 1.42903 * 117.00023 * 185.04608 * 15 14 13 17 17 C 1.52998 * 117.49790 * 135.54213 * 16 15 14 18 18 C 1.53001 * 117.50359 * 204.20765 * 16 15 14 19 19 C 1.38610 * 119.95727 * 359.51006 * 14 13 12 20 20 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.98234 * 359.97438 * 11 10 9 22 22 H 1.08007 * 119.94115 * 180.02562 * 12 11 10 23 23 H 1.08001 * 119.96877 * 180.25534 * 13 12 11 24 24 H 1.09008 * 115.54802 * 349.87825 * 16 15 14 25 25 H 1.08998 * 117.49823 * 215.00201 * 17 16 15 26 26 H 1.08991 * 117.50091 * 0.03155 * 17 16 15 27 27 H 1.09005 * 117.49642 * 359.97438 * 18 16 15 28 28 H 1.08995 * 117.50116 * 144.99807 * 18 16 15 29 29 H 1.07998 * 120.06214 * 180.27595 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4055 0.1054 11 6 3.2230 -3.5746 0.0888 12 6 3.8501 -4.8003 0.1965 13 6 5.2255 -4.8678 0.3167 14 6 5.9798 -3.7030 0.3392 15 8 7.3315 -3.7705 0.4617 16 6 8.0340 -2.5327 0.5894 17 6 9.1320 -2.4498 1.6517 18 6 9.5047 -2.5082 0.1680 19 6 5.3539 -2.4709 0.2308 20 1 -0.4850 0.8400 0.0004 21 1 2.1486 -3.5248 -0.0084 22 1 3.2652 -5.7082 0.1831 23 1 5.7137 -5.8279 0.3966 24 1 7.4428 -1.6354 0.4055 25 1 9.2632 -1.4982 2.1666 26 1 9.3188 -3.3395 2.2528 27 1 9.9365 -3.4365 -0.2061 28 1 9.8810 -1.5950 -0.2929 29 1 5.9396 -1.5636 0.2437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238548041.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = -3.024376 kcal Electronic energy + Delta-G solvation = -14158.496322 eV Core-core repulsion = 11628.323221 eV Total energy + Delta-G solvation = -2530.173102 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.82824 -38.49178 -36.44856 -34.71765 -32.42529 -29.83545 -28.65506 -25.28788 -23.49344 -22.50780 -21.37387 -20.74050 -18.55634 -17.64968 -16.35967 -15.52304 -15.26278 -14.78405 -14.55197 -14.11338 -13.70116 -13.57701 -13.21043 -12.66571 -12.33280 -11.79514 -11.64986 -11.28069 -11.12645 -10.83629 -10.80571 -10.43433 -10.15520 -9.76178 -9.44435 -8.91045 -7.93858 -7.29807 -6.45067 -4.13010 2.05645 2.23968 3.19667 3.22161 3.28464 3.36320 3.76138 4.19989 4.46176 4.70887 4.74318 4.86940 5.06847 5.07490 5.35480 5.51542 5.62525 5.75641 5.80943 6.00179 6.05041 6.17935 6.27610 6.45900 6.88077 7.09378 7.24575 7.37083 7.72399 7.85557 8.04200 8.89744 9.50559 10.62412 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.007844 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.292323 B = 3568.819921 C = 4385.114525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.215 6.215 10 C 0.192 3.808 11 C -0.250 4.250 12 C -0.041 4.041 13 C -0.232 4.232 14 C 0.164 3.836 15 O -0.287 6.287 16 C 0.006 3.994 17 C -0.187 4.187 18 C -0.176 4.176 19 C -0.281 4.281 20 H 0.280 0.720 21 H 0.135 0.865 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.181 -4.033 1.192 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.126 0.874 9 O -0.119 6.119 10 C 0.139 3.861 11 C -0.269 4.269 12 C -0.060 4.060 13 C -0.252 4.252 14 C 0.120 3.880 15 O -0.201 6.201 16 C -0.051 4.051 17 C -0.224 4.224 18 C -0.213 4.213 19 C -0.300 4.300 20 H 0.090 0.910 21 H 0.153 0.847 22 H 0.137 0.863 23 H 0.134 0.866 24 H 0.146 0.854 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.169 -3.827 1.175 13.764 hybrid contribution 0.071 0.854 -0.015 0.857 sum 13.241 -2.972 1.160 13.620 Atomic orbital electron populations 1.69643 1.05548 1.28544 1.47827 1.24465 0.95028 0.98805 0.95591 0.86189 0.80305 0.81472 0.78985 1.19824 1.20719 1.18429 1.20798 0.76710 0.96773 1.52392 0.87412 1.83551 1.22797 1.25712 1.79875 1.18736 0.90806 0.85596 0.90942 1.21245 1.01343 0.91750 1.12538 1.20597 0.93025 0.97019 0.95317 1.19924 0.93222 0.95629 1.16413 1.18452 0.80960 0.93557 0.95067 1.85955 1.17102 1.29742 1.87279 1.23047 0.88913 0.88617 1.04518 1.23433 1.02733 1.03856 0.92383 1.23336 0.96423 1.03894 0.97627 1.20100 0.93192 0.96876 1.19865 0.90984 0.84700 0.86303 0.86609 0.85389 0.87939 0.88064 0.88056 0.87803 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.96 55.48 0.77 -24.44 15 2 C 0.06 1.80 5.49 -17.52 -0.10 1.71 15 3 Si 0.90 21.49 28.62 -169.99 -4.86 16.63 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.26 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.39 -11.00 9.95 30.88 0.31 -10.69 15 8 H 0.11 3.08 5.43 -52.48 -0.29 2.80 15 9 O -0.21 -5.68 8.58 0.04 0.00 -5.68 15 10 C 0.19 4.51 6.64 -39.13 -0.26 4.25 15 11 C -0.25 -5.44 9.16 -39.37 -0.36 -5.80 15 12 C -0.04 -0.76 10.03 -39.63 -0.40 -1.16 15 13 C -0.23 -4.21 9.99 -39.38 -0.39 -4.61 15 14 C 0.16 3.12 6.68 -39.24 -0.26 2.86 15 15 O -0.29 -4.92 10.39 -19.41 -0.20 -5.12 15 16 C 0.01 0.08 6.21 -26.73 -0.17 -0.08 15 17 C -0.19 -2.10 10.48 -26.69 -0.28 -2.38 15 18 C -0.18 -1.92 10.48 -26.69 -0.28 -2.20 15 19 C -0.28 -5.80 9.13 -39.25 -0.36 -6.15 15 20 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.14 3.04 5.64 -52.49 -0.30 2.75 15 22 H 0.12 1.80 8.06 -52.48 -0.42 1.38 15 23 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 24 H 0.13 1.82 5.33 -51.92 -0.28 1.55 15 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.10 1.12 8.14 -51.93 -0.42 0.69 15 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 29 H 0.13 2.37 5.51 -52.49 -0.29 2.08 15 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -29.54 256.02 -5.80 -35.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.82 Total: 3.68 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.55 Total: -24.25 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.20 Total: -10.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.86 Total: 16.63 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.54 -5.80 -35.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238548041.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.310 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds