Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39621 * 120.14038 * 25.63569 * 3 2 1 5 5 C 1.38155 * 119.81933 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.95291 * 179.97438 * 5 4 3 7 7 C 1.38605 * 120.09914 * 359.97438 * 5 4 3 8 8 C 1.38299 * 120.27886 * 0.02562 * 7 5 4 9 9 C 1.37977 * 120.18350 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.05264 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47154 * 144.99646 * 10 9 8 12 12 N 1.46897 * 109.47488 * 24.99085 * 10 9 8 13 13 C 1.50702 * 109.46734 * 264.99087 * 10 9 8 14 14 H 1.07995 * 120.00057 * 0.02562 * 13 10 9 15 15 C 1.37886 * 119.99932 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99819 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99926 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46807 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46649 * 120.00018 * 17 15 13 20 20 H 1.48493 * 109.47155 * 240.00073 * 17 15 13 21 21 H 1.08001 * 120.08979 * 0.04099 * 4 3 2 22 22 H 1.07997 * 119.85928 * 179.74977 * 7 5 4 23 23 H 1.08003 * 119.91004 * 180.02562 * 8 7 5 24 24 H 1.00893 * 111.00003 * 176.04993 * 12 10 9 25 25 H 1.00902 * 110.99910 * 300.00134 * 12 10 9 26 26 H 0.96999 * 119.99805 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2696 -1.0876 -0.5224 5 6 4.6511 -1.0803 -0.5186 6 9 5.3327 -2.1321 -1.0229 7 6 5.3390 0.0046 0.0019 8 6 4.6482 1.0848 0.5204 9 6 3.2685 1.0891 0.5234 10 6 2.5188 2.2674 1.0896 11 1 1.6074 2.4289 0.5138 12 7 3.3637 3.4668 1.0159 13 6 2.1621 1.9917 2.5276 14 1 2.4499 1.0571 2.9857 15 6 1.4682 2.9328 3.2584 16 7 1.1173 4.0709 2.7003 17 14 1.0255 2.5909 5.0407 18 1 1.5307 1.2491 5.4275 19 1 1.6449 3.6224 5.9112 20 1 -0.4503 2.6296 5.2003 21 1 2.7337 -1.9328 -0.9286 22 1 6.4190 0.0046 0.0067 23 1 5.1903 1.9272 0.9241 24 1 2.8608 4.2831 1.3300 25 1 4.2154 3.3420 1.5423 26 1 0.6289 4.7328 3.2143 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238592561.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 1.968723 kcal Electronic energy + Delta-G solvation = -14034.460439 eV Core-core repulsion = 11413.336301 eV Total energy + Delta-G solvation = -2621.124138 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.64320 -39.13809 -35.76040 -34.80247 -31.73845 -31.11266 -29.20698 -26.12493 -23.75701 -23.23928 -20.38166 -18.78278 -16.71395 -16.37098 -15.79145 -15.49194 -15.35245 -14.45702 -14.14255 -13.56451 -13.41719 -12.85114 -12.74321 -12.55906 -12.11506 -11.84086 -11.67240 -11.19749 -11.04687 -10.87199 -10.70829 -10.11731 -9.89416 -8.81344 -8.75021 -8.13403 -7.39479 -6.23431 -4.40632 1.08618 1.55807 3.15345 3.24831 3.27065 3.28480 3.38468 4.18141 4.22720 4.33271 4.70760 4.99723 5.07636 5.23762 5.40236 5.64629 6.01346 6.21533 6.30828 6.39849 6.68093 6.75509 7.13029 7.40877 7.61282 7.86532 8.08481 8.47912 8.74122 8.91892 9.32091 10.75470 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.008957 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.028247 B = 3125.400277 C = 3371.631806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.270 3.730 3 C -0.011 4.011 4 C -0.110 4.110 5 C 0.066 3.934 6 F -0.145 7.145 7 C -0.126 4.126 8 C -0.086 4.086 9 C 0.013 3.987 10 C 0.234 3.766 11 H 0.054 0.946 12 N -0.849 5.849 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.071 3.929 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 H 0.136 0.864 22 H 0.134 0.866 23 H 0.143 0.857 24 H 0.360 0.640 25 H 0.314 0.686 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -5.867 -3.770 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.045 4.045 3 C -0.015 4.015 4 C -0.131 4.131 5 C 0.047 3.953 6 F -0.124 7.124 7 C -0.146 4.146 8 C -0.104 4.104 9 C 0.010 3.990 10 C 0.124 3.876 11 H 0.072 0.928 12 N -0.380 5.380 13 C -0.589 4.589 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.154 0.846 22 H 0.152 0.848 23 H 0.161 0.839 24 H 0.177 0.823 25 H 0.123 0.877 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.202 -5.857 -4.553 9.670 hybrid contribution 0.076 -0.290 2.036 2.058 sum 6.278 -6.147 -2.517 9.140 Atomic orbital electron populations 1.81120 1.12061 1.07724 1.08677 1.25281 0.92380 0.93438 0.93404 1.15600 0.84900 0.96192 1.04775 1.20899 0.92421 0.98619 1.01161 1.17256 0.89428 0.86211 1.02418 1.91465 1.79880 1.55522 1.85562 1.21315 1.00709 0.93071 0.99482 1.20837 0.93417 0.97633 0.98547 1.20751 0.93817 0.94813 0.89650 1.18096 0.91032 0.84201 0.94273 0.92827 1.59569 1.09031 1.07635 1.61755 1.21716 1.37582 1.03485 0.96093 0.92230 1.24999 0.94444 0.94964 0.98900 1.69734 1.38874 1.07215 1.36873 0.86427 0.78425 0.78538 0.84059 1.19572 1.20715 1.20741 0.84608 0.84823 0.83926 0.82298 0.87651 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.23 18.54 41.84 0.78 -8.45 15 2 C 0.27 5.48 13.89 -22.47 -0.31 5.17 15 3 C -0.01 -0.20 5.73 -106.94 -0.61 -0.81 15 4 C -0.11 -1.65 9.73 -39.10 -0.38 -2.03 15 5 C 0.07 0.95 7.29 -39.48 -0.29 0.66 15 6 F -0.15 -2.03 17.26 2.25 0.04 -1.99 15 7 C -0.13 -1.74 10.02 -39.42 -0.39 -2.13 15 8 C -0.09 -1.38 9.26 -39.65 -0.37 -1.75 15 9 C 0.01 0.25 5.03 -104.21 -0.52 -0.27 15 10 C 0.23 5.41 2.46 -70.02 -0.17 5.24 15 11 H 0.05 1.42 7.28 -51.93 -0.38 1.04 15 12 N -0.85 -18.31 8.79 -6.65 -0.06 -18.37 15 13 C -0.55 -13.98 8.71 -34.44 -0.30 -14.28 15 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 15 C 0.07 1.83 5.38 -17.81 -0.10 1.74 15 16 N -0.89 -23.75 11.54 55.43 0.64 -23.11 15 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 15 18 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 21 H 0.14 1.73 8.06 -52.49 -0.42 1.31 15 22 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 23 H 0.14 2.12 6.28 -52.48 -0.33 1.79 15 24 H 0.36 8.53 7.08 -39.30 -0.28 8.26 15 25 H 0.31 6.15 7.20 -39.29 -0.28 5.87 15 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 244.49 15.07 3.68 3.68 Total: -1.00 -27.03 244.49 -5.04 -32.07 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.66 Total: 9.06 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.45 Total: -8.45 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 1.36 Total: -49.93 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.03 -5.04 -32.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238592561.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -27.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds