Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39621 * 120.14038 * 25.63569 * 3 2 1 5 5 C 1.38155 * 119.81933 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.95291 * 179.97438 * 5 4 3 7 7 C 1.38605 * 120.09914 * 359.97438 * 5 4 3 8 8 C 1.38299 * 120.27886 * 0.02562 * 7 5 4 9 9 C 1.37977 * 120.18350 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.05264 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47154 * 144.99646 * 10 9 8 12 12 N 1.46897 * 109.47488 * 24.99085 * 10 9 8 13 13 C 1.50702 * 109.46734 * 264.99087 * 10 9 8 14 14 H 1.07995 * 120.00057 * 0.02562 * 13 10 9 15 15 C 1.37886 * 119.99932 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99819 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99926 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46807 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46649 * 120.00018 * 17 15 13 20 20 H 1.48493 * 109.47155 * 240.00073 * 17 15 13 21 21 H 1.08001 * 120.08979 * 0.04099 * 4 3 2 22 22 H 1.07997 * 119.85928 * 179.74977 * 7 5 4 23 23 H 1.08003 * 119.91004 * 180.02562 * 8 7 5 24 24 H 1.00893 * 111.00003 * 176.04993 * 12 10 9 25 25 H 1.00902 * 110.99910 * 300.00134 * 12 10 9 26 26 H 0.96999 * 119.99805 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2696 -1.0876 -0.5224 5 6 4.6511 -1.0803 -0.5186 6 9 5.3327 -2.1321 -1.0229 7 6 5.3390 0.0046 0.0019 8 6 4.6482 1.0848 0.5204 9 6 3.2685 1.0891 0.5234 10 6 2.5188 2.2674 1.0896 11 1 1.6074 2.4289 0.5138 12 7 3.3637 3.4668 1.0159 13 6 2.1621 1.9917 2.5276 14 1 2.4499 1.0571 2.9857 15 6 1.4682 2.9328 3.2584 16 7 1.1173 4.0709 2.7003 17 14 1.0255 2.5909 5.0407 18 1 1.5307 1.2491 5.4275 19 1 1.6449 3.6224 5.9112 20 1 -0.4503 2.6296 5.2003 21 1 2.7337 -1.9328 -0.9286 22 1 6.4190 0.0046 0.0067 23 1 5.1903 1.9272 0.9241 24 1 2.8608 4.2831 1.3300 25 1 4.2154 3.3420 1.5423 26 1 0.6289 4.7328 3.2143 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238592561.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = -14.851125 kcal Electronic energy + Delta-G solvation = -14035.189802 eV Core-core repulsion = 11413.336301 eV Total energy + Delta-G solvation = -2621.853502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.78107 -40.50670 -37.35904 -36.53198 -33.56753 -32.41858 -30.66937 -27.99159 -25.16213 -24.73702 -21.91189 -20.11635 -18.66552 -17.70638 -17.08534 -17.02213 -16.50331 -16.22714 -15.53463 -15.05596 -14.93360 -14.61211 -14.15020 -14.04477 -13.76968 -13.38066 -13.32260 -12.90763 -12.76489 -12.60670 -12.04763 -11.91920 -11.65642 -10.77341 -10.00195 -9.52346 -9.20177 -8.17550 -6.42737 -0.22438 0.29442 1.32664 1.37557 1.46647 1.69393 1.94789 2.32661 2.82117 2.89008 3.01779 3.45523 3.92343 3.94504 4.10729 4.37858 4.64273 4.75386 4.97778 5.06228 5.24972 5.33337 5.61077 5.72197 5.88241 5.97852 6.51352 6.59960 6.85829 7.11184 7.34670 8.77250 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.008957 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.028247 B = 3125.400277 C = 3371.631806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.282 3.718 3 C -0.029 4.029 4 C -0.097 4.097 5 C 0.076 3.924 6 F -0.137 7.137 7 C -0.102 4.102 8 C -0.086 4.086 9 C -0.012 4.012 10 C 0.240 3.760 11 H 0.009 0.991 12 N -0.839 5.839 13 C -0.556 4.556 14 H 0.053 0.947 15 C 0.026 3.974 16 N -0.913 5.913 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.289 1.289 21 H 0.159 0.841 22 H 0.174 0.826 23 H 0.154 0.846 24 H 0.347 0.653 25 H 0.326 0.674 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.309 -7.121 -3.756 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.032 4.032 3 C -0.033 4.033 4 C -0.118 4.118 5 C 0.057 3.943 6 F -0.115 7.115 7 C -0.121 4.121 8 C -0.104 4.104 9 C -0.016 4.016 10 C 0.129 3.871 11 H 0.026 0.974 12 N -0.368 5.368 13 C -0.596 4.596 14 H 0.071 0.929 15 C -0.175 4.175 16 N -0.552 5.552 17 Si 0.777 3.223 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.216 1.216 21 H 0.177 0.823 22 H 0.191 0.809 23 H 0.172 0.828 24 H 0.162 0.838 25 H 0.138 0.862 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.494 -7.126 -4.542 11.981 hybrid contribution -0.535 0.038 1.963 2.035 sum 7.958 -7.088 -2.579 10.965 Atomic orbital electron populations 1.81101 1.13333 1.09188 1.10419 1.25790 0.93018 0.92223 0.92210 1.15673 0.83672 0.97348 1.06638 1.21049 0.92991 0.98007 0.99745 1.17282 0.89092 0.86410 1.01527 1.91503 1.79557 1.55153 1.85318 1.21626 1.02538 0.91287 0.96691 1.20918 0.91899 0.98902 0.98671 1.20484 0.95196 0.93984 0.91915 1.17800 0.90414 0.86199 0.92685 0.97354 1.59507 1.09034 1.06590 1.61702 1.21983 1.37175 1.02909 0.97506 0.92891 1.25677 0.94696 0.95014 1.02143 1.69831 1.39570 1.07846 1.37963 0.85601 0.77522 0.78599 0.80531 1.19327 1.19627 1.21572 0.82316 0.80879 0.82848 0.83777 0.86248 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.99 18.54 19.00 0.35 -20.64 15 2 C 0.28 11.63 13.89 88.33 1.23 12.85 15 3 C -0.03 -1.04 5.73 -21.37 -0.12 -1.16 15 4 C -0.10 -2.64 9.73 22.58 0.22 -2.42 15 5 C 0.08 1.87 7.29 22.34 0.16 2.03 15 6 F -0.14 -3.17 17.26 44.97 0.78 -2.40 15 7 C -0.10 -2.35 10.02 22.37 0.22 -2.13 15 8 C -0.09 -2.51 9.26 22.22 0.21 -2.31 15 9 C -0.01 -0.47 5.03 -19.59 -0.10 -0.56 15 10 C 0.24 11.24 2.46 43.42 0.11 11.35 15 11 H 0.01 0.48 7.28 -2.38 -0.02 0.46 15 12 N -0.84 -36.26 8.79 -174.96 -1.54 -37.80 15 13 C -0.56 -28.59 8.71 25.60 0.22 -28.37 15 14 H 0.05 2.73 7.74 -2.91 -0.02 2.71 15 15 C 0.03 1.34 5.38 84.66 0.46 1.80 15 16 N -0.91 -49.71 11.54 21.45 0.25 -49.47 15 17 Si 0.95 42.38 29.54 68.60 2.03 44.40 15 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 20 H -0.29 -13.17 7.11 99.48 0.71 -12.47 15 21 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 22 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 23 H 0.15 4.12 6.28 -2.91 -0.02 4.10 15 24 H 0.35 16.74 7.08 -89.70 -0.64 16.10 15 25 H 0.33 12.52 7.20 -89.69 -0.65 11.87 15 26 H 0.27 13.94 8.31 -92.71 -0.77 13.17 15 Total: -1.00 -58.97 244.49 4.43 -54.54 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.04 Total: 20.27 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 2.60 Total: -8.92 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -0.94 Total: -107.90 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -58.97 4.43 -54.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238592561.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.690 kcal (2) G-P(sol) polarization free energy of solvation -58.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds