Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39702 * 120.12568 * 328.38429 * 3 2 1 5 5 C 1.37831 * 119.87215 * 180.28133 * 4 3 2 6 6 C 1.38662 * 120.12430 * 359.69288 * 5 4 3 7 7 F 1.35105 * 119.87303 * 180.02562 * 6 5 4 8 8 C 1.38622 * 120.25290 * 0.02562 * 6 5 4 9 9 C 1.37874 * 120.12316 * 0.02562 * 8 6 5 10 10 C 1.50693 * 120.05995 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.47373 * 220.00127 * 10 9 8 12 12 N 1.46897 * 109.47764 * 340.00123 * 10 9 8 13 13 C 1.50707 * 109.47158 * 100.00475 * 10 9 8 14 14 H 1.08000 * 119.99502 * 335.52815 * 13 10 9 15 15 C 1.37878 * 120.00089 * 155.52973 * 13 10 9 16 16 N 1.31513 * 119.99805 * 7.11168 * 15 13 10 17 17 Si 1.86795 * 119.99871 * 187.10622 * 15 13 10 18 18 H 1.48495 * 109.47596 * 270.00471 * 17 15 13 19 19 H 1.48500 * 109.46988 * 30.00446 * 17 15 13 20 20 H 1.48497 * 109.47155 * 149.99834 * 17 15 13 21 21 H 1.08002 * 120.06462 * 359.97438 * 4 3 2 22 22 H 1.07997 * 119.93954 * 179.72452 * 5 4 3 23 23 H 1.07993 * 119.93734 * 179.97438 * 8 6 5 24 24 H 1.00905 * 110.99840 * 66.89104 * 12 10 9 25 25 H 1.00899 * 111.00679 * 190.84572 * 12 10 9 26 26 H 0.97001 * 120.00367 * 355.35766 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -1.0280 0.6334 5 6 4.6479 -1.0192 0.6352 6 6 5.3381 0.0048 0.0045 7 9 6.6891 0.0082 0.0089 8 6 4.6471 1.0250 -0.6307 9 6 3.2684 1.0269 -0.6379 10 6 2.5187 2.1370 -1.3283 11 1 1.6526 2.4180 -0.7291 12 7 3.4022 3.2998 -1.4871 13 6 2.0599 1.6658 -2.6843 14 1 2.5844 0.8643 -3.1833 15 6 0.9707 2.2578 -3.2877 16 7 0.4183 3.3225 -2.7483 17 14 0.2798 1.5478 -4.8713 18 1 0.9542 2.1806 -6.0332 19 1 0.5151 0.0819 -4.9005 20 1 -1.1791 1.8164 -4.9391 21 1 2.7331 -1.8261 1.1250 22 1 5.1914 -1.8115 1.1284 23 1 5.1898 1.8202 -1.1200 24 1 4.1535 3.0980 -2.1298 25 1 2.8816 4.1118 -1.7831 26 1 0.7336 3.6514 -1.8920 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238616472.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -20.014008 kcal Electronic energy + Delta-G solvation = -14142.241986 eV Core-core repulsion = 11520.164604 eV Total energy + Delta-G solvation = -2622.077381 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.90090 -40.56248 -37.31906 -36.90605 -33.72074 -31.90300 -31.28590 -27.71700 -25.18919 -24.54250 -22.26135 -19.95566 -19.18579 -18.30443 -17.52333 -16.62830 -16.43365 -15.79327 -15.48982 -15.11496 -14.99800 -14.68531 -14.51236 -14.12128 -14.09767 -13.47787 -13.32390 -12.83138 -12.77110 -12.35177 -12.09028 -11.68613 -11.52831 -10.81715 -9.94135 -9.70385 -9.34661 -8.64975 -6.49607 -0.29579 0.32963 1.43904 1.52147 1.67988 1.73103 1.90053 2.44116 2.83821 3.00253 3.06145 3.22910 3.70673 3.87357 4.05800 4.40724 4.45794 4.68693 4.87135 5.01860 5.10156 5.16528 5.52934 5.71905 5.84828 6.00932 6.42906 6.45246 6.56050 6.76481 7.29329 8.64012 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.009980 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.919578 B = 2804.811757 C = 3191.034480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.281 3.719 3 C -0.067 4.067 4 C -0.026 4.026 5 C -0.156 4.156 6 C 0.127 3.873 7 F -0.135 7.135 8 C -0.156 4.156 9 C 0.023 3.977 10 C 0.220 3.780 11 H 0.020 0.980 12 N -0.839 5.839 13 C -0.624 4.624 14 H 0.048 0.952 15 C -0.013 4.013 16 N -0.925 5.925 17 Si 1.103 2.897 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.290 1.290 21 H 0.173 0.827 22 H 0.182 0.818 23 H 0.143 0.857 24 H 0.334 0.666 25 H 0.329 0.671 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.601 -8.376 5.224 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.033 4.033 3 C -0.071 4.071 4 C -0.046 4.046 5 C -0.175 4.175 6 C 0.107 3.893 7 F -0.114 7.114 8 C -0.175 4.175 9 C 0.020 3.980 10 C 0.110 3.890 11 H 0.038 0.962 12 N -0.366 5.366 13 C -0.663 4.663 14 H 0.066 0.934 15 C -0.214 4.214 16 N -0.562 5.562 17 Si 0.926 3.074 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.216 1.216 21 H 0.191 0.809 22 H 0.199 0.801 23 H 0.161 0.839 24 H 0.146 0.854 25 H 0.140 0.860 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.909 -8.209 4.866 12.395 hybrid contribution 1.072 0.274 -0.022 1.107 sum 8.982 -7.936 4.844 12.927 Atomic orbital electron populations 1.81114 1.13516 1.09292 1.10674 1.25879 0.93099 0.92372 0.91960 1.16163 0.83768 1.00065 1.07153 1.21230 0.93524 0.95464 0.94392 1.21257 0.93732 0.99677 1.02803 1.18021 0.76766 0.96054 0.98444 1.91504 1.28910 1.96359 1.94611 1.20856 0.93185 1.00044 1.03441 1.19999 0.93382 0.93874 0.90780 1.18032 0.90182 0.87185 0.93593 0.96167 1.59487 1.15082 1.06776 1.55268 1.22633 1.16662 1.22887 1.04136 0.93399 1.26980 0.94231 0.93869 1.06361 1.70921 1.45500 1.21581 1.18174 0.83102 0.75913 0.75718 0.72702 1.19104 1.20181 1.21633 0.80947 0.80062 0.83892 0.85383 0.85998 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.69 18.54 19.00 0.35 -21.33 15 2 C 0.28 11.67 13.80 88.33 1.22 12.89 15 3 C -0.07 -2.36 5.73 -21.33 -0.12 -2.48 15 4 C -0.03 -0.62 9.75 22.53 0.22 -0.40 15 5 C -0.16 -3.26 10.01 22.27 0.22 -3.04 15 6 C 0.13 3.36 7.31 22.46 0.16 3.52 15 7 F -0.14 -3.42 17.26 44.97 0.78 -2.65 15 8 C -0.16 -5.10 9.24 22.28 0.21 -4.89 15 9 C 0.02 0.90 5.10 -19.61 -0.10 0.80 15 10 C 0.22 10.30 2.05 43.42 0.09 10.38 15 11 H 0.02 1.10 6.37 -2.38 -0.02 1.09 15 12 N -0.84 -35.31 8.51 -174.95 -1.49 -36.80 15 13 C -0.62 -32.42 8.30 25.60 0.21 -32.21 15 14 H 0.05 2.51 7.81 -2.91 -0.02 2.48 15 15 C -0.01 -0.70 5.45 84.66 0.46 -0.24 15 16 N -0.92 -54.15 13.63 21.45 0.29 -53.86 15 17 Si 1.10 49.90 29.91 68.60 2.05 51.95 15 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 21 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 22 H 0.18 2.28 8.06 -2.91 -0.02 2.26 15 23 H 0.14 4.60 6.42 -2.91 -0.02 4.58 15 24 H 0.33 13.02 7.64 -89.69 -0.68 12.33 15 25 H 0.33 14.73 8.44 -89.69 -0.76 13.97 15 26 H 0.26 15.32 6.21 -92.71 -0.58 14.75 15 Total: -1.00 -62.99 244.92 4.56 -58.44 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.00 Total: 19.92 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 2.57 Total: -15.67 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -0.85 Total: -111.99 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -62.99 4.56 -58.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616472.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.422 kcal (2) G-P(sol) polarization free energy of solvation -62.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds