Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39630 * 120.13791 * 254.12318 * 3 2 1 5 5 C 1.38156 * 119.81939 * 180.27727 * 4 3 2 6 6 F 1.35103 * 119.95193 * 179.72524 * 5 4 3 7 7 C 1.38599 * 120.09975 * 359.70395 * 5 4 3 8 8 C 1.38311 * 120.28049 * 0.02562 * 7 5 4 9 9 C 1.37970 * 120.17707 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.05297 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.47300 * 220.00585 * 10 9 8 12 12 N 1.46904 * 109.46852 * 339.99616 * 10 9 8 13 13 C 1.50694 * 109.47316 * 99.99853 * 10 9 8 14 14 H 1.07998 * 120.00099 * 354.51676 * 13 10 9 15 15 C 1.37877 * 119.99812 * 174.51604 * 13 10 9 16 16 N 1.31521 * 119.99962 * 163.72961 * 15 13 10 17 17 Si 1.86799 * 120.00275 * 343.73149 * 15 13 10 18 18 H 1.48500 * 109.47457 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.46751 * 299.99996 * 17 15 13 20 20 H 1.48498 * 109.47170 * 59.99755 * 17 15 13 21 21 H 1.07993 * 120.08905 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.86446 * 180.02562 * 7 5 4 23 23 H 1.07998 * 119.90982 * 180.02562 * 8 7 5 24 24 H 1.00904 * 110.99471 * 66.16512 * 12 10 9 25 25 H 1.00901 * 110.99943 * 190.11396 * 12 10 9 26 26 H 0.96999 * 119.99700 * 1.18390 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.3313 1.1615 5 6 4.6504 0.3354 1.1525 6 9 5.3313 0.6603 2.2733 7 6 5.3390 0.0062 -0.0044 8 6 4.6489 -0.3274 -1.1557 9 6 3.2692 -0.3342 -1.1599 10 6 2.5201 -0.6976 -2.4161 11 1 1.6539 -0.0448 -2.5243 12 7 3.4042 -0.5344 -3.5779 13 6 2.0618 -2.1306 -2.3309 14 1 2.3647 -2.7457 -1.4965 15 6 1.2557 -2.6564 -3.3182 16 7 1.1152 -3.9594 -3.4278 17 14 0.3633 -1.5180 -4.5002 18 1 -0.4327 -2.3255 -5.4592 19 1 -0.5425 -0.6229 -3.7363 20 1 1.3550 -0.7007 -5.2442 21 1 2.7325 0.5871 2.0632 22 1 6.4190 0.0103 -0.0070 23 1 5.1915 -0.5833 -2.0537 24 1 4.1624 -1.1997 -3.5515 25 1 2.8860 -0.6109 -4.4402 26 1 1.5649 -4.5500 -2.8034 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238619834.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = 5.519940 kcal Electronic energy + Delta-G solvation = -14098.451666 eV Core-core repulsion = 11477.481520 eV Total energy + Delta-G solvation = -2620.970146 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.70602 -39.24780 -35.83323 -34.98475 -32.06242 -31.19270 -29.58987 -26.01985 -23.86504 -22.92755 -20.26070 -18.83300 -17.90163 -16.50617 -15.88301 -15.61482 -15.42341 -14.48368 -13.99533 -13.65818 -13.45024 -13.04760 -12.86201 -12.68366 -12.39522 -12.16465 -11.96065 -11.43429 -10.99427 -10.83333 -10.40411 -10.19725 -9.44276 -8.82677 -8.64319 -8.30248 -7.75383 -6.64682 -4.39490 1.00536 1.47429 3.15098 3.19605 3.30519 3.31895 3.43745 4.11913 4.22607 4.25405 4.63149 4.97817 5.01961 5.16962 5.23044 5.55360 5.89099 5.94093 6.13644 6.26089 6.48035 6.54406 6.96257 7.06373 7.54733 8.00444 8.04334 8.17673 8.32202 8.65304 9.33347 10.67618 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.036278 B = 0.009509 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.639599 B = 2943.966569 C = 3282.357763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.269 3.731 3 C -0.008 4.008 4 C -0.109 4.109 5 C 0.069 3.931 6 F -0.144 7.144 7 C -0.126 4.126 8 C -0.085 4.085 9 C 0.018 3.982 10 C 0.206 3.794 11 H 0.048 0.952 12 N -0.857 5.857 13 C -0.630 4.630 14 H 0.061 0.939 15 C 0.039 3.961 16 N -0.890 5.890 17 Si 1.038 2.962 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.272 1.272 21 H 0.137 0.863 22 H 0.135 0.865 23 H 0.145 0.855 24 H 0.331 0.669 25 H 0.334 0.666 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 7.895 4.562 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.047 4.047 3 C -0.012 4.012 4 C -0.131 4.131 5 C 0.049 3.951 6 F -0.123 7.123 7 C -0.146 4.146 8 C -0.103 4.103 9 C 0.015 3.985 10 C 0.096 3.904 11 H 0.066 0.934 12 N -0.389 5.389 13 C -0.669 4.669 14 H 0.079 0.921 15 C -0.169 4.169 16 N -0.522 5.522 17 Si 0.866 3.134 18 H -0.206 1.206 19 H -0.205 1.205 20 H -0.199 1.199 21 H 0.155 0.845 22 H 0.153 0.847 23 H 0.162 0.838 24 H 0.143 0.857 25 H 0.149 0.851 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.429 8.646 3.576 10.817 hybrid contribution 1.244 -1.136 1.413 2.198 sum 6.673 7.510 4.988 11.217 Atomic orbital electron populations 1.81126 1.12021 1.08612 1.07559 1.25277 0.92383 0.93542 0.93473 1.15567 0.84923 1.06232 0.94494 1.20905 0.92443 1.01571 0.98154 1.17264 0.89428 1.04985 0.83381 1.91472 1.79888 1.90744 1.50203 1.21325 1.00778 1.00562 0.91931 1.20836 0.93287 0.98514 0.97663 1.20368 0.93678 0.89716 0.94740 1.18356 0.90511 0.96596 0.84940 0.93449 1.59754 1.15387 1.58011 1.05732 1.22459 1.36653 0.95526 1.12309 0.92108 1.25777 0.94919 0.97991 0.98235 1.70850 1.42906 1.02855 1.35588 0.84083 0.77343 0.75391 0.76628 1.20559 1.20528 1.19900 0.84485 0.84717 0.83763 0.85739 0.85083 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.15 18.54 41.84 0.78 -8.37 15 2 C 0.27 5.43 13.80 -22.47 -0.31 5.12 15 3 C -0.01 -0.15 5.73 -106.94 -0.61 -0.76 15 4 C -0.11 -1.63 9.74 -39.09 -0.38 -2.01 15 5 C 0.07 0.98 7.29 -39.48 -0.29 0.69 15 6 F -0.14 -1.99 17.26 2.25 0.04 -1.95 15 7 C -0.13 -1.71 10.02 -39.42 -0.39 -2.11 15 8 C -0.08 -1.33 9.26 -39.65 -0.37 -1.70 15 9 C 0.02 0.35 5.06 -104.21 -0.53 -0.18 15 10 C 0.21 4.49 1.97 -70.02 -0.14 4.35 15 11 H 0.05 1.11 6.15 -51.93 -0.32 0.79 15 12 N -0.86 -16.70 8.50 -6.65 -0.06 -16.75 15 13 C -0.63 -16.30 8.73 -34.44 -0.30 -16.60 15 14 H 0.06 1.73 7.99 -52.49 -0.42 1.31 15 15 C 0.04 1.05 5.44 -17.82 -0.10 0.96 15 16 N -0.89 -25.97 13.70 55.43 0.76 -25.21 15 17 Si 1.04 24.02 26.54 -169.99 -4.51 19.51 15 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 20 H -0.27 -5.55 5.53 56.52 0.31 -5.24 15 21 H 0.14 1.74 8.06 -52.49 -0.42 1.32 15 22 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 23 H 0.14 2.08 6.40 -52.49 -0.34 1.75 15 24 H 0.33 6.06 7.60 -39.29 -0.30 5.77 15 25 H 0.33 6.69 5.67 -39.29 -0.22 6.47 15 26 H 0.27 7.92 8.72 -40.82 -0.36 7.56 15 LS Contribution 239.96 15.07 3.62 3.62 Total: -1.00 -28.54 239.96 -4.48 -33.01 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.68 Total: 8.40 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.42 Total: -12.25 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 1.48 Total: -50.33 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.51 Total: 19.51 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.54 -4.48 -33.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619834.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.534 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds