Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39630 * 120.13791 * 254.12318 * 3 2 1 5 5 C 1.38156 * 119.81939 * 180.27727 * 4 3 2 6 6 F 1.35103 * 119.95193 * 179.72524 * 5 4 3 7 7 C 1.38599 * 120.09975 * 359.70395 * 5 4 3 8 8 C 1.38311 * 120.28049 * 0.02562 * 7 5 4 9 9 C 1.37970 * 120.17707 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.05297 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.47300 * 220.00585 * 10 9 8 12 12 N 1.46904 * 109.46852 * 339.99616 * 10 9 8 13 13 C 1.50694 * 109.47316 * 99.99853 * 10 9 8 14 14 H 1.07998 * 120.00099 * 354.51676 * 13 10 9 15 15 C 1.37877 * 119.99812 * 174.51604 * 13 10 9 16 16 N 1.31521 * 119.99962 * 163.72961 * 15 13 10 17 17 Si 1.86799 * 120.00275 * 343.73149 * 15 13 10 18 18 H 1.48500 * 109.47457 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.46751 * 299.99996 * 17 15 13 20 20 H 1.48498 * 109.47170 * 59.99755 * 17 15 13 21 21 H 1.07993 * 120.08905 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.86446 * 180.02562 * 7 5 4 23 23 H 1.07998 * 119.90982 * 180.02562 * 8 7 5 24 24 H 1.00904 * 110.99471 * 66.16512 * 12 10 9 25 25 H 1.00901 * 110.99943 * 190.11396 * 12 10 9 26 26 H 0.96999 * 119.99700 * 1.18390 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.3313 1.1615 5 6 4.6504 0.3354 1.1525 6 9 5.3313 0.6603 2.2733 7 6 5.3390 0.0062 -0.0044 8 6 4.6489 -0.3274 -1.1557 9 6 3.2692 -0.3342 -1.1599 10 6 2.5201 -0.6976 -2.4161 11 1 1.6539 -0.0448 -2.5243 12 7 3.4042 -0.5344 -3.5779 13 6 2.0618 -2.1306 -2.3309 14 1 2.3647 -2.7457 -1.4965 15 6 1.2557 -2.6564 -3.3182 16 7 1.1152 -3.9594 -3.4278 17 14 0.3633 -1.5180 -4.5002 18 1 -0.4327 -2.3255 -5.4592 19 1 -0.5425 -0.6229 -3.7363 20 1 1.3550 -0.7007 -5.2442 21 1 2.7325 0.5871 2.0632 22 1 6.4190 0.0103 -0.0070 23 1 5.1915 -0.5833 -2.0537 24 1 4.1624 -1.1997 -3.5515 25 1 2.8860 -0.6109 -4.4402 26 1 1.5649 -4.5500 -2.8034 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619834.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -13.816576 kcal Electronic energy + Delta-G solvation = -14099.290160 eV Core-core repulsion = 11477.481520 eV Total energy + Delta-G solvation = -2621.808640 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.83460 -40.59586 -37.42274 -36.67635 -34.01715 -32.48085 -30.96451 -27.84289 -25.21839 -24.46038 -21.81440 -20.15721 -19.91986 -17.86900 -17.11359 -17.08334 -16.56456 -15.91473 -15.66975 -15.17983 -14.97517 -14.69060 -14.43792 -14.18675 -14.14976 -13.80552 -13.45755 -12.86767 -12.58975 -12.17749 -12.11482 -11.96192 -11.40319 -10.70202 -10.06156 -9.68748 -9.48782 -8.71354 -6.52512 -0.28975 0.23005 1.30548 1.43881 1.58828 1.63000 1.89019 2.32718 2.73200 2.83792 2.96199 3.39134 3.75173 3.86790 4.04335 4.27358 4.35993 4.63781 4.77204 4.99280 5.11266 5.24341 5.54759 5.61103 5.84493 5.92243 6.37569 6.45088 6.46432 6.80170 7.26811 8.52115 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.036278 B = 0.009509 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.639599 B = 2943.966569 C = 3282.357763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.280 3.720 3 C -0.028 4.028 4 C -0.099 4.099 5 C 0.078 3.922 6 F -0.136 7.136 7 C -0.104 4.104 8 C -0.084 4.084 9 C -0.010 4.010 10 C 0.211 3.789 11 H 0.032 0.968 12 N -0.839 5.839 13 C -0.619 4.619 14 H 0.025 0.975 15 C -0.009 4.009 16 N -0.926 5.926 17 Si 1.069 2.931 18 H -0.286 1.286 19 H -0.287 1.287 20 H -0.225 1.225 21 H 0.159 0.841 22 H 0.174 0.826 23 H 0.158 0.842 24 H 0.340 0.660 25 H 0.332 0.668 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 9.601 4.817 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.034 4.034 3 C -0.032 4.032 4 C -0.120 4.120 5 C 0.058 3.942 6 F -0.115 7.115 7 C -0.123 4.123 8 C -0.102 4.102 9 C -0.013 4.013 10 C 0.100 3.900 11 H 0.050 0.950 12 N -0.371 5.371 13 C -0.658 4.658 14 H 0.043 0.957 15 C -0.210 4.210 16 N -0.561 5.561 17 Si 0.892 3.108 18 H -0.212 1.212 19 H -0.214 1.214 20 H -0.149 1.149 21 H 0.176 0.824 22 H 0.192 0.808 23 H 0.176 0.824 24 H 0.152 0.848 25 H 0.147 0.853 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.716 10.368 3.838 13.482 hybrid contribution 0.672 -1.652 1.491 2.325 sum 8.388 8.716 5.329 13.218 Atomic orbital electron populations 1.81116 1.13283 1.10453 1.08916 1.25787 0.93008 0.92316 0.92310 1.15670 0.83707 1.08241 0.95628 1.21061 0.93043 1.00162 0.97735 1.17306 0.89101 1.03972 0.83792 1.91507 1.79580 1.90535 1.49869 1.21656 1.02608 0.97668 0.90410 1.20964 0.91874 0.98216 0.99141 1.20224 0.95078 0.92330 0.93679 1.18125 0.91026 0.93412 0.87407 0.95033 1.59681 1.14762 1.57884 1.04728 1.22616 1.35346 0.97563 1.10306 0.95686 1.26944 0.95543 0.98253 1.00231 1.70965 1.44780 1.03914 1.36468 0.83710 0.77382 0.74307 0.75398 1.21224 1.21362 1.14883 0.82356 0.80845 0.82432 0.84762 0.85317 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.58 18.54 19.00 0.35 -20.23 15 2 C 0.28 11.36 13.80 88.33 1.22 12.58 15 3 C -0.03 -0.99 5.73 -21.36 -0.12 -1.11 15 4 C -0.10 -2.68 9.74 22.59 0.22 -2.46 15 5 C 0.08 1.89 7.29 22.34 0.16 2.05 15 6 F -0.14 -3.16 17.26 44.97 0.78 -2.38 15 7 C -0.10 -2.35 10.02 22.37 0.22 -2.12 15 8 C -0.08 -2.36 9.26 22.22 0.21 -2.16 15 9 C -0.01 -0.35 5.06 -19.59 -0.10 -0.45 15 10 C 0.21 9.02 1.97 43.42 0.09 9.11 15 11 H 0.03 1.46 6.15 -2.38 -0.01 1.45 15 12 N -0.84 -30.87 8.50 -174.95 -1.49 -32.36 15 13 C -0.62 -32.45 8.73 25.60 0.22 -32.23 15 14 H 0.02 1.46 7.99 -2.91 -0.02 1.44 15 15 C -0.01 -0.47 5.44 84.65 0.46 -0.01 15 16 N -0.93 -55.68 13.70 21.45 0.29 -55.39 15 17 Si 1.07 48.35 26.54 68.60 1.82 50.17 15 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 15 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 20 H -0.22 -8.39 5.53 99.48 0.55 -7.84 15 21 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 22 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 23 H 0.16 3.98 6.40 -2.91 -0.02 3.96 15 24 H 0.34 11.66 7.60 -89.69 -0.68 10.98 15 25 H 0.33 12.43 5.67 -89.69 -0.51 11.92 15 26 H 0.26 15.65 8.72 -92.71 -0.81 14.84 15 Total: -1.00 -63.37 239.96 4.20 -59.17 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.14 Total: 17.81 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 2.58 Total: -16.80 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -0.84 Total: -107.97 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 1.82 Total: 50.17 kcal Total: -63.37 4.20 -59.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619834.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.356 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds