Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39680 * 120.17279 * 295.11561 * 3 2 1 5 5 C 1.37873 * 119.87242 * 180.02562 * 4 3 2 6 6 C 1.38445 * 120.21856 * 0.02562 * 5 4 3 7 7 C 1.38231 * 120.34520 * 359.95866 * 6 5 4 8 8 C 1.50701 * 119.93455 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46896 * 220.02056 * 8 7 6 10 10 N 1.46894 * 109.47497 * 340.02160 * 8 7 6 11 11 C 1.50703 * 109.46694 * 100.02362 * 8 7 6 12 12 H 1.07998 * 119.99897 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00004 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99926 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00147 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46868 * 60.00815 * 15 13 11 17 17 H 1.48501 * 109.46853 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47189 * 300.00441 * 15 13 11 19 19 C 1.38281 * 120.12283 * 0.04229 * 7 6 5 20 20 F 1.35103 * 120.10824 * 180.25333 * 19 7 6 21 21 H 1.08005 * 120.06571 * 0.04827 * 4 3 2 22 22 H 1.08001 * 119.89091 * 179.97438 * 5 4 3 23 23 H 1.07998 * 119.82701 * 179.97438 * 6 5 4 24 24 H 1.00892 * 111.00115 * 296.04602 * 10 8 7 25 25 H 1.00904 * 110.99514 * 60.00230 * 10 8 7 26 26 H 0.97000 * 120.00234 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2702 -0.5116 1.0934 5 6 4.6489 -0.5074 1.0871 6 6 5.3392 0.0032 0.0010 7 6 4.6533 0.5120 -1.0859 8 6 5.4141 1.0650 -2.2634 9 1 4.9174 1.9647 -2.6268 10 7 6.7844 1.3953 -1.8499 11 6 5.4556 0.0353 -3.3630 12 1 4.9791 -0.9238 -3.2229 13 6 6.1018 0.3175 -4.5478 14 7 6.6824 1.4852 -4.7182 15 14 6.1538 -0.9591 -5.9105 16 1 4.7686 -1.2938 -6.3283 17 1 6.9023 -0.4137 -7.0713 18 1 6.8312 -2.1843 -5.4153 19 6 3.2706 0.5149 -1.0946 20 9 2.6005 1.0076 -2.1592 21 1 2.7343 -0.9105 1.9420 22 1 5.1922 -0.9030 1.9325 23 1 6.4192 0.0037 0.0029 24 1 6.7862 2.1303 -1.1587 25 1 7.2662 0.5769 -1.5088 26 1 7.1367 1.6839 -5.5518 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621517.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -6.665008 kcal Electronic energy + Delta-G solvation = -14102.355878 eV Core-core repulsion = 11480.857353 eV Total energy + Delta-G solvation = -2621.498525 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.91020 -40.30825 -37.84323 -36.32515 -33.75830 -31.84394 -30.99185 -28.07971 -25.29542 -24.22259 -22.29757 -19.54376 -18.60033 -18.21815 -17.51130 -16.68435 -16.58208 -16.07598 -15.75872 -14.89618 -14.84586 -14.56170 -14.45760 -14.28145 -13.80944 -13.44871 -13.15541 -12.81450 -12.70820 -12.48183 -12.23723 -11.67830 -11.35815 -10.55087 -9.88193 -9.54283 -8.92930 -7.98106 -6.19417 -0.32757 0.30877 1.44583 1.44988 1.46370 1.52670 1.84685 2.47021 2.71641 2.79096 3.24395 3.26540 3.91113 4.05682 4.28692 4.31296 4.51806 4.74641 5.04946 5.14690 5.23348 5.33617 5.58142 5.75367 5.85844 6.16340 6.28926 6.64906 7.11761 7.31023 7.52984 9.04920 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.009239 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.695919 B = 3029.823785 C = 3452.666982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.278 3.722 3 C -0.078 4.078 4 C -0.045 4.045 5 C -0.108 4.108 6 C -0.069 4.069 7 C -0.135 4.135 8 C 0.262 3.738 9 H 0.008 0.992 10 N -0.819 5.819 11 C -0.543 4.543 12 H 0.046 0.954 13 C 0.038 3.962 14 N -0.877 5.877 15 Si 0.943 3.057 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.118 3.882 20 F -0.149 7.149 21 H 0.175 0.825 22 H 0.184 0.816 23 H 0.149 0.851 24 H 0.318 0.682 25 H 0.331 0.669 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -4.419 13.160 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.036 4.036 3 C -0.083 4.083 4 C -0.065 4.065 5 C -0.125 4.125 6 C -0.088 4.088 7 C -0.139 4.139 8 C 0.152 3.848 9 H 0.026 0.974 10 N -0.348 5.348 11 C -0.581 4.581 12 H 0.064 0.936 13 C -0.166 4.166 14 N -0.513 5.513 15 Si 0.769 3.231 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.192 1.192 19 C 0.096 3.904 20 F -0.127 7.127 21 H 0.193 0.807 22 H 0.201 0.799 23 H 0.167 0.833 24 H 0.131 0.869 25 H 0.146 0.854 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.942 -4.053 12.214 13.015 hybrid contribution -0.165 -0.467 -0.696 0.854 sum -2.107 -4.520 11.518 12.551 Atomic orbital electron populations 1.81179 1.12746 1.10282 1.08737 1.25643 0.92615 0.92619 0.92748 1.16169 0.83957 1.10255 0.97913 1.21396 0.94683 0.95005 0.95393 1.21534 0.93172 0.98759 0.99074 1.21441 1.01696 0.94308 0.91348 1.21566 0.91958 1.00616 0.99711 1.17694 0.85268 0.93713 0.88142 0.97383 1.58810 1.17400 1.12388 1.46155 1.21026 1.36825 1.00673 0.99591 0.93598 1.25608 0.94490 0.96641 0.99838 1.70199 1.33813 1.22295 1.24993 0.85875 0.77796 0.80139 0.79256 1.20691 1.21060 1.19152 1.17898 0.90348 0.98529 0.83648 1.91462 1.80575 1.85293 1.55395 0.80715 0.79921 0.83303 0.86948 0.85416 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.79 18.54 19.00 0.35 -15.43 15 2 C 0.28 8.84 14.98 88.33 1.32 10.16 15 3 C -0.08 -2.29 5.74 -21.29 -0.12 -2.41 15 4 C -0.04 -0.87 9.76 22.53 0.22 -0.65 15 5 C -0.11 -1.93 10.03 22.23 0.22 -1.70 15 6 C -0.07 -1.81 9.24 22.32 0.21 -1.60 15 7 C -0.13 -4.99 5.02 -19.86 -0.10 -5.09 15 8 C 0.26 12.36 2.56 43.43 0.11 12.47 15 9 H 0.01 0.46 7.95 -2.39 -0.02 0.44 15 10 N -0.82 -34.39 8.01 -174.95 -1.40 -35.79 15 11 C -0.54 -28.95 8.70 25.60 0.22 -28.72 15 12 H 0.05 2.45 7.74 -2.91 -0.02 2.43 15 13 C 0.04 2.10 5.39 84.65 0.46 2.55 15 14 N -0.88 -50.53 12.77 21.45 0.27 -50.26 15 15 Si 0.94 43.36 29.54 68.60 2.03 45.38 15 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 19 C 0.12 4.41 7.21 22.67 0.16 4.58 15 20 F -0.15 -6.61 16.21 44.97 0.73 -5.88 15 21 H 0.18 2.05 8.06 -2.91 -0.02 2.03 15 22 H 0.18 1.58 8.06 -2.91 -0.02 1.56 15 23 H 0.15 3.42 6.22 -2.91 -0.02 3.40 15 24 H 0.32 11.47 9.06 -89.70 -0.81 10.66 15 25 H 0.33 12.44 7.27 -89.69 -0.65 11.79 15 26 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -66.63 247.67 4.46 -62.16 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.22 Total: 10.24 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 2.70 Total: -10.42 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -0.78 Total: -101.48 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.73 Total: -5.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -66.63 4.46 -62.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621517.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.499 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds