Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99584 * 0.02562 * 11 10 9 13 13 C 1.46851 * 120.00136 * 179.97438 * 11 10 9 14 14 C 1.40044 * 120.11322 * 359.73199 * 13 11 10 15 15 C 1.37125 * 119.88086 * 179.73712 * 14 13 11 16 16 C 1.39082 * 120.11309 * 0.53720 * 15 14 13 17 17 O 1.35662 * 119.88341 * 179.69630 * 16 15 14 18 18 C 1.39076 * 120.23239 * 359.71061 * 16 15 14 19 19 C 1.37123 * 120.11648 * 0.02961 * 18 16 15 20 20 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 23 23 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 24 24 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 25 25 H 1.07994 * 120.06008 * 359.97115 * 14 13 11 26 26 H 1.07994 * 119.94273 * 180.24665 * 15 14 13 27 27 H 0.96696 * 114.00293 * 270.01930 * 17 16 15 28 28 H 1.07996 * 119.94222 * 180.02562 * 18 16 15 29 29 H 1.07994 * 120.05448 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1350 -1.5863 0.0004 13 6 6.2627 -3.9086 0.0003 14 6 5.5649 -5.1227 0.0065 15 6 6.2552 -6.3075 0.0014 16 6 7.6460 -6.3047 0.0015 17 8 8.3243 -7.4796 0.0027 18 6 8.3439 -5.1017 0.0006 19 6 7.6631 -3.9114 0.0003 20 1 -0.4849 0.8401 0.0004 21 1 3.8746 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 3.6584 -3.1503 -0.8903 24 1 3.6578 -3.1508 0.8896 25 1 4.4849 -5.1260 0.0114 26 1 5.7181 -7.2444 0.0021 27 1 8.5207 -7.8195 0.8864 28 1 9.4238 -5.1050 0.0002 29 1 8.2060 -2.9778 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238712668.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = -65.657068 kcal Electronic energy + Delta-G solvation = -13805.460171 eV Core-core repulsion = 11272.571113 eV Total energy + Delta-G solvation = -2532.889059 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14943 -38.73529 -36.56427 -33.58079 -31.75090 -31.03722 -30.14070 -26.35852 -23.56290 -22.77832 -21.03560 -19.27372 -18.66283 -17.15908 -16.29178 -15.80737 -15.52605 -14.83663 -14.52952 -14.03884 -13.89447 -13.65193 -12.89692 -12.63762 -12.51605 -12.13919 -12.01912 -11.39791 -10.98700 -10.66522 -10.23562 -10.09172 -9.80389 -9.24097 -9.22948 -9.09556 -8.77045 -8.52664 -6.04648 -4.03438 0.57359 1.22444 2.56237 3.35702 3.42481 3.51916 3.63988 3.96267 4.36850 4.48751 4.69494 4.76916 5.19323 5.30117 5.30522 5.52527 5.65593 5.84840 6.01602 6.07621 6.14427 6.18295 6.36033 6.56113 6.75636 7.29828 7.35825 7.38645 7.74387 7.96022 8.50655 8.98322 9.58312 11.08209 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063402 B = 0.005519 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.517054 B = 5072.389480 C = 5490.896645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.149 4.149 11 C 0.388 3.612 12 O -0.454 6.454 13 C -0.170 4.170 14 C -0.053 4.053 15 C -0.159 4.159 16 C 0.126 3.874 17 O -0.500 6.500 18 C -0.161 4.161 19 C -0.051 4.051 20 H 0.263 0.737 21 H 0.022 0.978 22 H 0.018 0.982 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.143 0.857 26 H 0.134 0.866 27 H 0.392 0.608 28 H 0.131 0.869 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.989 -13.114 1.725 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.043 4.043 10 C -0.186 4.186 11 C 0.266 3.734 12 O -0.330 6.330 13 C -0.171 4.171 14 C -0.072 4.072 15 C -0.178 4.178 16 C 0.082 3.918 17 O -0.311 6.311 18 C -0.179 4.179 19 C -0.069 4.069 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.152 0.848 27 H 0.249 0.751 28 H 0.149 0.851 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.117 -12.382 1.122 19.573 hybrid contribution 0.376 0.642 0.458 0.874 sum 15.493 -11.739 1.580 19.503 Atomic orbital electron populations 1.69911 1.06286 1.26973 1.51008 1.24993 0.94722 0.99238 0.94351 0.86798 0.80577 0.83449 0.78735 1.20227 1.21398 1.18628 1.21111 0.89249 0.94577 1.51328 0.90873 1.19424 0.96774 0.90619 0.97437 1.21987 0.90038 1.03035 1.03535 1.22985 0.92852 0.86768 0.70768 1.90483 1.72086 1.34398 1.36009 1.20927 0.94440 0.95861 1.05894 1.21373 1.00957 0.90766 0.94074 1.21298 0.93394 0.99189 1.03872 1.18792 0.90071 0.85125 0.97851 1.84737 1.76444 1.36259 1.33666 1.21256 1.00689 0.91740 1.04251 1.21237 0.93401 0.98341 0.93940 0.92705 0.95968 0.96402 0.88974 0.88945 0.83962 0.84836 0.75083 0.85088 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.15 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 15 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 6 H -0.26 -6.63 6.54 56.52 0.37 -6.26 15 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 15 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 15 9 C -0.01 -0.13 3.33 -27.89 -0.09 -0.22 15 10 C -0.15 -2.84 4.24 -27.88 -0.12 -2.96 15 11 C 0.39 6.95 7.11 -30.82 -0.22 6.73 15 12 O -0.45 -9.53 15.97 5.54 0.09 -9.44 15 13 C -0.17 -2.45 5.87 -105.06 -0.62 -3.07 15 14 C -0.05 -0.65 9.44 -39.31 -0.37 -1.02 15 15 C -0.16 -1.69 9.95 -39.67 -0.39 -2.08 15 16 C 0.13 1.34 6.71 -38.96 -0.26 1.08 15 17 O -0.50 -4.44 13.48 -18.69 -0.25 -4.69 15 18 C -0.16 -1.76 9.95 -39.68 -0.39 -2.16 15 19 C -0.05 -0.66 9.57 -39.31 -0.38 -1.04 15 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 21 H 0.02 0.56 7.16 -51.93 -0.37 0.19 15 22 H 0.02 0.45 7.53 -51.93 -0.39 0.06 15 23 H 0.09 1.62 8.09 -51.93 -0.42 1.20 15 24 H 0.09 1.61 8.07 -51.93 -0.42 1.19 15 25 H 0.14 1.53 7.04 -52.49 -0.37 1.16 15 26 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 27 H 0.39 1.50 9.06 45.56 0.41 1.91 15 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.14 1.74 7.64 -52.49 -0.40 1.34 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -33.94 259.92 -5.81 -39.75 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.39 Total: -2.09 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.27 Total: -18.08 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.15 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.16 Total: -14.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.94 -5.81 -39.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238712668.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.905 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds