Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99584 * 0.02562 * 11 10 9 13 13 C 1.46851 * 120.00136 * 179.97438 * 11 10 9 14 14 C 1.40044 * 120.11322 * 359.73199 * 13 11 10 15 15 C 1.37125 * 119.88086 * 179.73712 * 14 13 11 16 16 C 1.39082 * 120.11309 * 0.53720 * 15 14 13 17 17 O 1.35662 * 119.88341 * 179.69630 * 16 15 14 18 18 C 1.39076 * 120.23239 * 359.71061 * 16 15 14 19 19 C 1.37123 * 120.11648 * 0.02961 * 18 16 15 20 20 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 23 23 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 24 24 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 25 25 H 1.07994 * 120.06008 * 359.97115 * 14 13 11 26 26 H 1.07994 * 119.94273 * 180.24665 * 15 14 13 27 27 H 0.96696 * 114.00293 * 270.01930 * 17 16 15 28 28 H 1.07996 * 119.94222 * 180.02562 * 18 16 15 29 29 H 1.07994 * 120.05448 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1350 -1.5863 0.0004 13 6 6.2627 -3.9086 0.0003 14 6 5.5649 -5.1227 0.0065 15 6 6.2552 -6.3075 0.0014 16 6 7.6460 -6.3047 0.0015 17 8 8.3243 -7.4796 0.0027 18 6 8.3439 -5.1017 0.0006 19 6 7.6631 -3.9114 0.0003 20 1 -0.4849 0.8401 0.0004 21 1 3.8746 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 3.6584 -3.1503 -0.8903 24 1 3.6578 -3.1508 0.8896 25 1 4.4849 -5.1260 0.0114 26 1 5.7181 -7.2444 0.0021 27 1 8.5207 -7.8195 0.8864 28 1 9.4238 -5.1050 0.0002 29 1 8.2060 -2.9778 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238712668.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = -89.402337 kcal Electronic energy + Delta-G solvation = -13806.489844 eV Core-core repulsion = 11272.571113 eV Total energy + Delta-G solvation = -2533.918731 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.20164 -39.89351 -37.44743 -35.60049 -33.50736 -32.11703 -31.28284 -28.11920 -24.82879 -23.76652 -22.63092 -20.65327 -19.44552 -19.10289 -17.66590 -16.84441 -16.46267 -16.32231 -16.21632 -15.45693 -15.22877 -14.67879 -14.50659 -14.37927 -13.69051 -13.39074 -13.08509 -12.92191 -12.89702 -12.16348 -11.97375 -11.77320 -11.47130 -11.37589 -10.79051 -10.58548 -10.11449 -9.69417 -8.32249 -6.35207 -0.43462 0.35492 1.32233 1.34146 1.37709 1.48357 2.33885 2.69372 3.03199 3.07657 3.23462 3.81946 3.95917 4.22997 4.31841 4.35979 4.49018 4.55498 4.76277 4.98851 5.00582 5.22632 5.31733 5.33585 5.41974 5.42643 5.60375 5.73410 6.22941 6.57219 6.73676 6.81727 7.30090 8.83405 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063402 B = 0.005519 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.517054 B = 5072.389480 C = 5490.896645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.051 0.949 9 C -0.003 4.003 10 C -0.146 4.146 11 C 0.396 3.604 12 O -0.497 6.497 13 C -0.196 4.196 14 C -0.050 4.050 15 C -0.160 4.160 16 C 0.142 3.858 17 O -0.504 6.504 18 C -0.162 4.162 19 C -0.057 4.057 20 H 0.267 0.733 21 H 0.010 0.990 22 H 0.008 0.992 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.418 0.582 28 H 0.153 0.847 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.635 -14.692 1.816 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.040 4.040 10 C -0.183 4.183 11 C 0.278 3.722 12 O -0.376 6.376 13 C -0.197 4.197 14 C -0.068 4.068 15 C -0.178 4.178 16 C 0.097 3.903 17 O -0.319 6.319 18 C -0.180 4.180 19 C -0.075 4.075 20 H 0.076 0.924 21 H 0.029 0.971 22 H 0.027 0.973 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.170 0.830 26 H 0.176 0.824 27 H 0.279 0.721 28 H 0.171 0.829 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.771 -13.995 1.230 21.878 hybrid contribution -0.110 0.933 0.441 1.038 sum 16.661 -13.062 1.670 21.237 Atomic orbital electron populations 1.70025 1.07790 1.28092 1.52496 1.25837 0.95525 1.02918 0.94299 0.85828 0.79281 0.79470 0.79145 1.19381 1.20339 1.18451 1.21444 0.91269 0.93736 1.50276 0.93104 1.19309 0.94232 0.94225 0.96277 1.21903 0.91554 0.99638 1.05158 1.23005 0.92133 0.87789 0.69322 1.90467 1.72461 1.36029 1.38606 1.20596 0.94933 0.94661 1.09505 1.21502 1.01564 0.90420 0.93325 1.21551 0.93628 0.99530 1.03065 1.18887 0.90211 0.85578 0.95598 1.84678 1.76083 1.35279 1.35878 1.21444 1.01805 0.91085 1.03704 1.21268 0.92939 0.99122 0.94157 0.92387 0.97131 0.97343 0.87462 0.87294 0.82953 0.82365 0.72119 0.82947 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.96 21.45 0.30 -58.86 15 2 C 0.01 0.70 5.47 84.66 0.46 1.17 15 3 Si 0.94 46.65 27.47 68.60 1.88 48.53 15 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 15 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.26 -12.77 6.54 99.48 0.65 -12.12 15 7 C -0.53 -30.57 9.66 25.60 0.25 -30.32 15 8 H 0.05 3.08 7.99 -2.91 -0.02 3.06 15 9 C 0.00 -0.15 3.33 29.85 0.10 -0.05 15 10 C -0.15 -5.49 4.24 29.85 0.13 -5.37 15 11 C 0.40 14.11 7.11 27.94 0.20 14.31 15 12 O -0.50 -21.13 15.97 -3.08 -0.05 -21.18 15 13 C -0.20 -5.42 5.87 -20.15 -0.12 -5.54 15 14 C -0.05 -1.09 9.44 22.45 0.21 -0.88 15 15 C -0.16 -2.84 9.95 22.21 0.22 -2.61 15 16 C 0.14 2.51 6.71 22.67 0.15 2.66 15 17 O -0.50 -6.83 13.48 -89.78 -1.21 -8.04 15 18 C -0.16 -3.11 9.95 22.21 0.22 -2.89 15 19 C -0.06 -1.40 9.57 22.44 0.21 -1.18 15 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 21 H 0.01 0.53 7.16 -2.39 -0.02 0.52 15 22 H 0.01 0.42 7.53 -2.38 -0.02 0.40 15 23 H 0.11 3.70 8.09 -2.39 -0.02 3.68 15 24 H 0.11 3.72 8.07 -2.39 -0.02 3.70 15 25 H 0.15 2.93 7.04 -2.91 -0.02 2.91 15 26 H 0.16 2.02 8.06 -2.91 -0.02 2.00 15 27 H 0.42 1.34 9.06 -74.06 -0.67 0.66 15 28 H 0.15 2.21 8.06 -2.91 -0.02 2.19 15 29 H 0.13 3.30 7.64 -2.91 -0.02 3.28 15 Total: -1.00 -73.27 259.92 3.40 -69.88 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 0.44 Total: 0.37 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 2.04 Total: -30.69 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.30 Total: -58.86 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.26 Total: -29.22 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.88 Total: 48.53 kcal Total: -73.27 3.40 -69.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238712668.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.527 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds