Wall clock time and date at job start Mon Mar 30 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48506 * 109.46726 * 274.97950 * 3 2 1 5 5 H 1.48499 * 109.47439 * 34.97722 * 3 2 1 6 6 H 1.48500 * 109.47375 * 154.98419 * 3 2 1 7 7 C 1.40461 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99986 * 186.26201 * 7 2 1 9 9 C 1.41030 * 119.99454 * 6.26417 * 7 2 1 10 10 O 1.21431 * 120.00523 * 353.73554 * 9 7 2 11 11 C 1.50704 * 119.99355 * 173.73908 * 9 7 2 12 12 C 1.53002 * 109.46529 * 179.97438 * 11 9 7 13 13 C 1.50708 * 109.46875 * 179.97438 * 12 11 9 14 14 C 1.38265 * 119.94158 * 89.99939 * 13 12 11 15 15 C 1.38142 * 120.05663 * 179.97438 * 14 13 12 16 16 C 1.38731 * 119.94191 * 0.02562 * 15 14 13 17 17 O 1.35901 * 120.05284 * 179.97438 * 16 15 14 18 18 C 1.38725 * 119.89012 * 0.27939 * 16 15 14 19 19 C 1.38151 * 119.94130 * 359.41753 * 18 16 15 20 20 H 0.96998 * 120.00379 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47393 * 59.99844 * 11 9 7 22 22 H 1.09003 * 109.46851 * 299.99366 * 11 9 7 23 23 H 1.09004 * 109.47182 * 60.00195 * 12 11 9 24 24 H 1.08994 * 109.47278 * 299.99571 * 12 11 9 25 25 H 1.08002 * 119.97213 * 0.02562 * 14 13 12 26 26 H 1.08002 * 120.02819 * 179.97438 * 15 14 13 27 27 H 0.96704 * 113.99875 * 90.00556 * 17 16 15 28 28 H 1.08003 * 120.02912 * 179.72380 * 18 16 15 29 29 H 1.08007 * 119.97057 * 180.27601 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.3814 2.1072 -1.3949 5 1 1.4932 2.6201 0.8026 6 1 3.5854 1.4122 0.5920 7 6 2.0076 -1.2164 0.0005 8 1 3.0827 -1.2191 0.1026 9 6 1.3087 -2.4341 -0.1322 10 8 0.0944 -2.4405 -0.1325 11 6 2.0691 -3.7276 -0.2735 12 6 1.0808 -4.8888 -0.3994 13 6 1.8411 -6.1823 -0.5413 14 6 2.1904 -6.9047 0.5847 15 6 2.8869 -8.0908 0.4573 16 6 3.2362 -8.5569 -0.8018 17 8 3.9218 -9.7233 -0.9298 18 6 2.8901 -7.8271 -1.9297 19 6 2.1882 -6.6446 -1.7972 20 1 -0.4850 0.8400 -0.0004 21 1 2.6963 -3.8783 0.6051 22 1 2.6957 -3.6852 -1.1644 23 1 0.4533 -4.7383 -1.2779 24 1 0.4545 -4.9311 0.4917 25 1 1.9178 -6.5416 1.5647 26 1 3.1598 -8.6545 1.3372 27 1 3.3575 -10.5040 -1.0145 28 1 3.1649 -8.1855 -2.9108 29 1 1.9146 -6.0783 -2.6753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238715667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:28 Heat of formation + Delta-G solvation = -100.376135 kcal Electronic energy + Delta-G solvation = -13808.355945 eV Core-core repulsion = 11273.961355 eV Total energy + Delta-G solvation = -2534.394591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71746 -39.08542 -37.80704 -34.88757 -33.87298 -31.92318 -30.30206 -28.54236 -25.16315 -23.72330 -22.29434 -20.93877 -19.31098 -18.42212 -17.26760 -16.83870 -16.60820 -16.10724 -15.36282 -15.29707 -15.07215 -14.48422 -14.33443 -13.64927 -13.49342 -13.28428 -12.93194 -12.59722 -12.58528 -12.31809 -12.07779 -11.92456 -11.73319 -11.33911 -10.97249 -9.93145 -9.62408 -9.30682 -8.28693 -7.08460 0.28761 0.41021 1.34355 1.37401 1.54302 2.19227 2.22222 2.69228 3.32993 3.37785 3.88509 3.92189 4.09573 4.34770 4.46922 4.52716 4.61132 4.67560 4.98304 4.99582 5.06117 5.20321 5.21866 5.33556 5.41087 5.45802 5.76457 5.92046 5.98833 6.73171 6.82524 6.89237 8.28193 8.51990 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.064678 B = 0.005100 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.812241 B = 5488.813843 C = 5610.853251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.026 3.974 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.249 1.249 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.337 3.663 10 O -0.594 6.594 11 C -0.138 4.138 12 C -0.054 4.054 13 C -0.092 4.092 14 C -0.111 4.111 15 C -0.144 4.144 16 C 0.092 3.908 17 O -0.507 6.507 18 C -0.144 4.144 19 C -0.111 4.111 20 H 0.281 0.719 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.130 0.870 26 H 0.146 0.854 27 H 0.409 0.591 28 H 0.146 0.854 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -13.136 -1.633 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.193 4.193 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.601 4.601 8 H 0.102 0.898 9 C 0.236 3.764 10 O -0.487 6.487 11 C -0.176 4.176 12 C -0.091 4.091 13 C -0.092 4.092 14 C -0.129 4.129 15 C -0.163 4.163 16 C 0.047 3.953 17 O -0.320 6.320 18 C -0.163 4.163 19 C -0.129 4.129 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.148 0.852 26 H 0.164 0.836 27 H 0.268 0.732 28 H 0.164 0.836 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.479 -12.770 -1.593 14.408 hybrid contribution -0.264 0.494 -0.012 0.560 sum 6.215 -12.277 -1.605 13.854 Atomic orbital electron populations 1.70088 1.09845 1.29717 1.32396 1.27256 0.95464 1.05534 0.91052 0.85080 0.79145 0.75063 0.79546 1.18431 1.19193 1.17221 1.21378 0.96345 0.93338 1.48998 0.89828 1.20314 0.88786 0.90146 0.77200 1.90348 1.17508 1.89461 1.51377 1.21824 0.98831 0.94861 1.02126 1.20150 0.96467 0.90733 1.01787 1.20089 0.98957 0.95978 0.94220 1.21111 0.98379 0.94774 0.98615 1.21575 0.99253 0.97459 0.97969 1.18517 0.95281 0.89184 0.92296 1.84771 1.36114 1.15612 1.95514 1.21571 0.99205 0.95967 0.99507 1.21111 0.98350 0.96341 0.97088 0.90858 0.90715 0.90694 0.92684 0.92632 0.85173 0.83593 0.73194 0.83609 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.30 11.75 21.91 0.26 -47.04 15 2 C 0.03 1.42 5.50 85.43 0.47 1.88 15 3 Si 0.99 40.00 29.57 68.60 2.03 42.03 15 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 15 7 C -0.57 -32.34 9.22 23.50 0.22 -32.13 15 8 H 0.08 4.33 7.86 -2.92 -0.02 4.31 15 9 C 0.34 19.45 6.90 26.37 0.18 19.63 15 10 O -0.59 -38.94 14.53 -3.50 -0.05 -38.99 15 11 C -0.14 -6.20 5.55 29.85 0.17 -6.03 15 12 C -0.05 -2.18 4.63 29.85 0.14 -2.04 15 13 C -0.09 -3.02 5.13 -19.85 -0.10 -3.12 15 14 C -0.11 -3.19 9.69 22.25 0.22 -2.98 15 15 C -0.14 -3.53 9.99 22.36 0.22 -3.31 15 16 C 0.09 2.18 6.70 22.50 0.15 2.33 15 17 O -0.51 -9.84 13.50 -92.44 -1.25 -11.08 15 18 C -0.14 -3.54 9.99 22.37 0.22 -3.31 15 19 C -0.11 -3.20 9.69 22.25 0.22 -2.98 15 20 H 0.28 14.99 8.29 -92.71 -0.77 14.22 15 21 H 0.07 3.13 8.14 -2.39 -0.02 3.11 15 22 H 0.07 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.05 2.36 8.04 -2.39 -0.02 2.34 15 24 H 0.05 2.37 8.04 -2.39 -0.02 2.35 15 25 H 0.13 3.54 8.06 -2.91 -0.02 3.52 15 26 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 27 H 0.41 3.64 9.06 -74.05 -0.67 2.97 15 28 H 0.15 2.87 8.06 -2.91 -0.02 2.85 15 29 H 0.13 3.55 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -73.11 263.48 3.57 -69.53 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.49 Total: 17.61 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 2.10 Total: -32.05 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.26 Total: -47.04 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -1.30 Total: -50.07 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -73.11 3.57 -69.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238715667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.842 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds