Wall clock time and date at job start Mon Mar 30 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37768 * 119.78996 * 2 1 4 4 C 1.40751 * 120.04637 * 179.97438 * 3 2 1 5 5 C 1.41448 * 120.17251 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99650 * 147.32979 * 5 4 3 7 7 C 1.39935 * 119.99672 * 327.33055 * 5 4 3 8 8 N 1.30828 * 119.99635 * 166.91624 * 7 5 4 9 9 Si 1.86798 * 120.00287 * 346.91858 * 7 5 4 10 10 H 1.48505 * 109.46963 * 92.64603 * 9 7 5 11 11 H 1.48498 * 109.46816 * 212.64042 * 9 7 5 12 12 H 1.48499 * 109.47202 * 332.64663 * 9 7 5 13 13 C 1.40507 * 119.65160 * 0.02562 * 4 3 2 14 14 C 1.39045 * 119.59094 * 359.97438 * 13 4 3 15 15 C 1.47767 * 120.03218 * 179.97438 * 14 13 4 16 16 O 1.21461 * 120.00126 * 186.08962 * 15 14 13 17 17 O 1.34707 * 120.00101 * 6.09228 * 15 14 13 18 18 C 1.38312 * 119.79028 * 179.71964 * 2 1 3 19 19 C 1.50692 * 119.82379 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.46950 * 89.99952 * 1 2 3 21 21 H 1.08998 * 109.47345 * 210.00204 * 1 2 3 22 22 H 1.09001 * 109.47053 * 330.00159 * 1 2 3 23 23 H 1.07994 * 119.97458 * 0.02562 * 3 2 1 24 24 H 0.97002 * 120.00185 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.20256 * 179.97438 * 13 4 3 26 26 H 0.96694 * 117.00410 * 179.97438 * 17 15 14 27 27 H 1.09007 * 109.47572 * 96.01674 * 19 18 2 28 28 H 1.09007 * 109.47720 * 216.01788 * 19 18 2 29 29 H 1.09004 * 109.47565 * 336.01945 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1956 0.0000 4 6 3.5990 1.2019 0.0005 5 6 4.3044 2.4279 0.0000 6 1 5.2559 2.5036 0.5052 7 6 3.7693 3.5427 -0.6551 8 7 4.2783 4.7299 -0.4477 9 14 2.3284 3.3356 -1.8257 10 1 1.0568 3.5407 -1.0865 11 1 2.4317 4.3348 -2.9194 12 1 2.3511 1.9670 -2.4015 13 6 4.2995 -0.0160 0.0005 14 6 3.5938 -1.2141 0.0005 15 6 4.3207 -2.5006 0.0000 16 8 3.7088 -3.5438 -0.1116 17 8 5.6620 -2.5164 0.1233 18 6 2.1942 -1.2003 0.0059 19 6 1.4319 -2.5002 0.0116 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6477 2.1287 0.0004 24 1 3.9077 5.5027 -0.9021 25 1 5.3796 -0.0216 0.0005 26 1 6.0932 -3.3819 0.1179 27 1 1.3414 -2.8730 -1.0087 28 1 1.9649 -3.2314 0.6196 29 1 0.4380 -2.3368 0.4282 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257971152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:52 Heat of formation + Delta-G solvation = -83.909786 kcal Electronic energy + Delta-G solvation = -14639.536518 eV Core-core repulsion = 12105.855962 eV Total energy + Delta-G solvation = -2533.680556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87181 -38.02666 -35.69567 -34.06776 -32.27607 -31.35507 -28.00163 -26.26957 -24.34495 -23.10894 -20.46038 -19.69706 -17.60524 -17.29353 -15.71946 -15.38983 -15.15617 -14.70954 -14.23868 -13.42656 -13.19512 -12.97515 -12.37071 -12.15870 -11.93904 -11.78197 -11.55021 -11.22102 -11.15860 -10.97645 -10.68889 -10.38359 -10.00799 -9.75303 -9.53879 -9.16821 -7.86393 -7.59142 -6.98209 -4.56893 1.64761 2.41001 3.02785 3.14313 3.20611 3.33197 3.61524 3.91302 4.37212 5.17892 5.60447 5.71379 5.79972 5.93797 6.01426 6.11221 6.31225 6.34788 6.44927 6.60294 6.62326 6.73476 6.91967 7.02621 7.16679 7.34049 7.54450 7.68411 7.84123 8.24959 8.41491 8.48764 8.69398 10.04496 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.010866 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.066212 B = 2576.301010 C = 3278.739009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.199 4.199 4 C 0.076 3.924 5 C -0.447 4.447 6 H 0.094 0.906 7 C 0.083 3.917 8 N -0.812 5.812 9 Si 0.907 3.093 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.244 1.244 13 C -0.141 4.141 14 C -0.098 4.098 15 C 0.526 3.474 16 O -0.527 6.527 17 O -0.513 6.513 18 C -0.142 4.142 19 C -0.101 4.101 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.108 0.892 24 H 0.286 0.714 25 H 0.118 0.882 26 H 0.401 0.599 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -7.253 -0.493 7.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.219 4.219 4 C 0.073 3.927 5 C -0.475 4.475 6 H 0.112 0.888 7 C -0.135 4.135 8 N -0.436 5.436 9 Si 0.733 3.267 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.167 1.167 13 C -0.161 4.161 14 C -0.099 4.099 15 C 0.374 3.626 16 O -0.418 6.418 17 O -0.324 6.324 18 C -0.143 4.143 19 C -0.157 4.157 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.125 0.875 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.258 0.742 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.466 -6.837 -0.544 7.684 hybrid contribution -0.193 -0.329 -0.540 0.661 sum -3.659 -7.166 -1.084 8.119 Atomic orbital electron populations 1.20820 0.92777 1.01912 1.01430 1.19198 0.94514 0.92416 1.00067 1.21208 0.94594 0.96113 1.09953 1.17694 0.91289 0.93174 0.90571 1.19453 1.06780 0.91714 1.29594 0.88818 1.26100 0.97048 0.94115 0.96261 1.69648 1.38748 0.99549 1.35666 0.86385 0.80591 0.79922 0.79787 1.19447 1.21668 1.16712 1.21453 0.98904 0.90723 1.04973 1.18559 0.92437 0.89306 1.09631 1.21490 0.79601 0.90173 0.71347 1.90754 1.68092 1.35390 1.47609 1.84679 1.22605 1.39564 1.85538 1.19066 0.90998 0.94481 1.09774 1.20840 0.98402 0.94999 1.01484 0.92120 0.91596 0.92322 0.87475 0.90382 0.86375 0.74201 0.92937 0.90742 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.58 36.01 0.34 -1.55 15 2 C -0.06 -1.30 5.87 -104.77 -0.61 -1.91 15 3 C -0.20 -4.63 6.68 -38.80 -0.26 -4.89 15 4 C 0.08 1.86 5.08 -106.87 -0.54 1.31 15 5 C -0.45 -11.73 9.59 -37.73 -0.36 -12.09 15 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 15 7 C 0.08 2.12 5.45 -17.34 -0.09 2.03 15 8 N -0.81 -21.24 13.93 55.55 0.77 -20.46 15 9 Si 0.91 20.24 24.46 -169.99 -4.16 16.08 15 10 H -0.27 -5.75 6.67 56.52 0.38 -5.37 15 11 H -0.29 -6.26 7.11 56.52 0.40 -5.85 15 12 H -0.24 -5.59 6.77 56.52 0.38 -5.21 15 13 C -0.14 -3.22 9.36 -38.43 -0.36 -3.58 15 14 C -0.10 -2.12 5.87 -105.05 -0.62 -2.73 15 15 C 0.53 10.09 8.20 34.63 0.28 10.38 15 16 O -0.53 -10.47 14.09 -19.24 -0.27 -10.74 15 17 O -0.51 -8.08 12.68 -40.51 -0.51 -8.59 15 18 C -0.14 -2.98 5.93 -103.95 -0.62 -3.59 15 19 C -0.10 -1.84 8.40 36.00 0.30 -1.54 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 0.98 5.84 -51.93 -0.30 0.68 15 22 H 0.06 0.93 8.08 -51.93 -0.42 0.51 15 23 H 0.11 2.46 4.67 -52.49 -0.24 2.22 15 24 H 0.29 6.78 8.30 -40.82 -0.34 6.44 15 25 H 0.12 2.58 7.61 -52.48 -0.40 2.18 15 26 H 0.40 4.03 9.11 45.56 0.42 4.44 15 27 H 0.05 0.94 8.14 -51.92 -0.42 0.52 15 28 H 0.07 1.40 5.81 -51.92 -0.30 1.10 15 29 H 0.05 0.78 5.69 -51.93 -0.30 0.49 15 LS Contribution 245.16 15.07 3.69 3.69 Total: -1.00 -28.37 245.16 -5.00 -33.38 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.00 Total: 4.82 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -2.53 Total: -18.17 kcal Atomic # 7 Polarization: -21.24 SS G_CDS: 0.77 Total: -20.46 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.78 Total: -19.33 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.16 Total: 16.08 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.37 -5.00 -33.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257971152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.534 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds