Wall clock time and date at job start Mon Mar 30 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37768 * 119.78996 * 2 1 4 4 C 1.40751 * 120.04637 * 179.97438 * 3 2 1 5 5 C 1.41448 * 120.17251 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99650 * 147.32979 * 5 4 3 7 7 C 1.39935 * 119.99672 * 327.33055 * 5 4 3 8 8 N 1.30828 * 119.99635 * 166.91624 * 7 5 4 9 9 Si 1.86798 * 120.00287 * 346.91858 * 7 5 4 10 10 H 1.48505 * 109.46963 * 92.64603 * 9 7 5 11 11 H 1.48498 * 109.46816 * 212.64042 * 9 7 5 12 12 H 1.48499 * 109.47202 * 332.64663 * 9 7 5 13 13 C 1.40507 * 119.65160 * 0.02562 * 4 3 2 14 14 C 1.39045 * 119.59094 * 359.97438 * 13 4 3 15 15 C 1.47767 * 120.03218 * 179.97438 * 14 13 4 16 16 O 1.21461 * 120.00126 * 186.08962 * 15 14 13 17 17 O 1.34707 * 120.00101 * 6.09228 * 15 14 13 18 18 C 1.38312 * 119.79028 * 179.71964 * 2 1 3 19 19 C 1.50692 * 119.82379 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.46950 * 89.99952 * 1 2 3 21 21 H 1.08998 * 109.47345 * 210.00204 * 1 2 3 22 22 H 1.09001 * 109.47053 * 330.00159 * 1 2 3 23 23 H 1.07994 * 119.97458 * 0.02562 * 3 2 1 24 24 H 0.97002 * 120.00185 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.20256 * 179.97438 * 13 4 3 26 26 H 0.96694 * 117.00410 * 179.97438 * 17 15 14 27 27 H 1.09007 * 109.47572 * 96.01674 * 19 18 2 28 28 H 1.09007 * 109.47720 * 216.01788 * 19 18 2 29 29 H 1.09004 * 109.47565 * 336.01945 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1956 0.0000 4 6 3.5990 1.2019 0.0005 5 6 4.3044 2.4279 0.0000 6 1 5.2559 2.5036 0.5052 7 6 3.7693 3.5427 -0.6551 8 7 4.2783 4.7299 -0.4477 9 14 2.3284 3.3356 -1.8257 10 1 1.0568 3.5407 -1.0865 11 1 2.4317 4.3348 -2.9194 12 1 2.3511 1.9670 -2.4015 13 6 4.2995 -0.0160 0.0005 14 6 3.5938 -1.2141 0.0005 15 6 4.3207 -2.5006 0.0000 16 8 3.7088 -3.5438 -0.1116 17 8 5.6620 -2.5164 0.1233 18 6 2.1942 -1.2003 0.0059 19 6 1.4319 -2.5002 0.0116 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6477 2.1287 0.0004 24 1 3.9077 5.5027 -0.9021 25 1 5.3796 -0.0216 0.0005 26 1 6.0932 -3.3819 0.1179 27 1 1.3414 -2.8730 -1.0087 28 1 1.9649 -3.2314 0.6196 29 1 0.4380 -2.3368 0.4282 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257971152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:51 Heat of formation + Delta-G solvation = -102.006419 kcal Electronic energy + Delta-G solvation = -14640.321247 eV Core-core repulsion = 12105.855962 eV Total energy + Delta-G solvation = -2534.465285 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40143 -39.67155 -37.12832 -35.86454 -33.97217 -33.04727 -29.64429 -27.81160 -26.06810 -24.73967 -22.02797 -21.43878 -19.36003 -18.78868 -17.44847 -17.08180 -16.64803 -16.33627 -15.96357 -14.94983 -14.80377 -14.60335 -13.93510 -13.66109 -13.50267 -13.39406 -13.12490 -12.93198 -12.62749 -12.47342 -12.41551 -12.06881 -11.74558 -11.48760 -11.21775 -10.85305 -9.60043 -9.33374 -8.87605 -6.53227 -0.03075 0.66452 1.24480 1.38167 1.45014 1.68439 2.10567 2.23007 2.57123 3.33184 4.04052 4.27159 4.29481 4.39879 4.47724 4.67543 4.79372 4.93720 4.95119 5.05346 5.14250 5.19185 5.25664 5.42470 5.62053 5.68648 5.78683 5.91460 6.09815 6.29620 6.61176 6.76421 7.09346 8.21052 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.010866 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.066212 B = 2576.301010 C = 3278.739009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 C -0.207 4.207 4 C 0.058 3.942 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.047 3.953 8 N -0.854 5.854 9 Si 0.958 3.042 10 H -0.250 1.250 11 H -0.278 1.278 12 H -0.254 1.254 13 C -0.154 4.154 14 C -0.111 4.111 15 C 0.533 3.467 16 O -0.532 6.532 17 O -0.508 6.508 18 C -0.135 4.135 19 C -0.097 4.097 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.108 0.892 24 H 0.293 0.707 25 H 0.116 0.884 26 H 0.428 0.572 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -9.266 -0.965 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.226 4.226 4 C 0.056 3.944 5 C -0.513 4.513 6 H 0.077 0.923 7 C -0.167 4.167 8 N -0.481 5.481 9 Si 0.781 3.219 10 H -0.175 1.175 11 H -0.205 1.205 12 H -0.177 1.177 13 C -0.173 4.173 14 C -0.112 4.112 15 C 0.380 3.620 16 O -0.425 6.425 17 O -0.322 6.322 18 C -0.137 4.137 19 C -0.153 4.153 20 H 0.096 0.904 21 H 0.108 0.892 22 H 0.086 0.914 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.290 0.710 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.662 -8.873 -1.004 10.574 hybrid contribution 0.536 0.053 -0.325 0.629 sum -5.126 -8.820 -1.329 10.288 Atomic orbital electron populations 1.20924 0.89274 1.03669 1.03058 1.19701 0.97145 0.91419 0.98486 1.21361 0.93999 0.97323 1.09896 1.17806 0.92329 0.92993 0.91316 1.19415 1.06423 0.93574 1.31898 0.92259 1.26749 0.99244 0.93559 0.97116 1.69684 1.40711 1.00295 1.37438 0.85604 0.78625 0.79343 0.78292 1.17456 1.20509 1.17740 1.21485 0.99066 0.91039 1.05732 1.18896 0.93377 0.90034 1.08930 1.20993 0.80540 0.89048 0.71384 1.90756 1.68607 1.35175 1.47924 1.84612 1.20955 1.41893 1.84710 1.19638 0.91127 0.96009 1.06888 1.20862 0.99361 0.92985 1.02058 0.90380 0.89182 0.91364 0.87391 0.89615 0.86574 0.71035 0.92203 0.91161 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 9.58 71.24 0.68 -2.61 15 2 C -0.07 -2.64 5.87 -19.96 -0.12 -2.76 15 3 C -0.21 -9.37 6.68 22.77 0.15 -9.22 15 4 C 0.06 2.90 5.08 -21.32 -0.11 2.79 15 5 C -0.48 -26.69 9.59 23.47 0.23 -26.46 15 6 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 7 C 0.05 2.48 5.45 85.25 0.46 2.95 15 8 N -0.85 -46.43 13.93 21.82 0.30 -46.13 15 9 Si 0.96 41.53 24.46 68.60 1.68 43.20 15 10 H -0.25 -9.96 6.67 99.48 0.66 -9.30 15 11 H -0.28 -11.43 7.11 99.48 0.71 -10.73 15 12 H -0.25 -11.25 6.77 99.48 0.67 -10.58 15 13 C -0.15 -7.09 9.36 23.02 0.22 -6.88 15 14 C -0.11 -4.63 5.87 -20.14 -0.12 -4.75 15 15 C 0.53 19.27 8.20 70.34 0.58 19.85 15 16 O -0.53 -19.57 14.09 19.96 0.28 -19.29 15 17 O -0.51 -14.91 12.68 -56.17 -0.71 -15.62 15 18 C -0.14 -5.30 5.93 -19.43 -0.12 -5.41 15 19 C -0.10 -3.11 8.40 71.23 0.60 -2.51 15 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.09 2.18 5.84 -2.39 -0.01 2.17 15 22 H 0.07 1.87 8.08 -2.39 -0.02 1.85 15 23 H 0.11 4.82 4.67 -2.91 -0.01 4.81 15 24 H 0.29 14.33 8.30 -92.71 -0.77 13.56 15 25 H 0.12 5.24 7.61 -2.91 -0.02 5.22 15 26 H 0.43 7.34 9.11 -74.06 -0.67 6.67 15 27 H 0.06 1.88 8.14 -2.38 -0.02 1.86 15 28 H 0.07 2.37 5.81 -2.38 -0.01 2.36 15 29 H 0.08 2.06 5.69 -2.38 -0.01 2.05 15 Total: -1.00 -61.82 245.16 4.45 -57.37 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.44 Total: 15.48 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 2.46 Total: -35.02 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.30 Total: -46.13 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.43 Total: -34.91 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.68 Total: 43.20 kcal Total: -61.82 4.45 -57.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257971152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.632 kcal (2) G-P(sol) polarization free energy of solvation -61.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds