Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38802 * 119.69456 * 2 1 4 4 C 1.38678 * 120.56295 * 179.76289 * 3 2 1 5 5 C 1.39007 * 119.86304 * 0.51714 * 4 3 2 6 6 C 1.41081 * 119.49942 * 359.74061 * 5 4 3 7 7 C 1.41177 * 120.26687 * 179.97438 * 6 5 4 8 8 H 1.08008 * 120.00057 * 212.73346 * 7 6 5 9 9 C 1.39921 * 120.00070 * 32.73787 * 7 6 5 10 10 N 1.30868 * 120.00153 * 19.77484 * 9 7 6 11 11 Si 1.86803 * 120.00012 * 199.77693 * 9 7 6 12 12 H 1.48494 * 109.47286 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47111 * 119.99992 * 11 9 7 14 14 H 1.48503 * 109.47038 * 239.99636 * 11 9 7 15 15 C 1.36453 * 119.69435 * 180.27663 * 2 1 3 16 16 C 1.50701 * 120.00067 * 359.95706 * 15 2 1 17 17 O 1.36160 * 108.80347 * 179.72316 * 5 4 3 18 18 C 1.43999 * 105.50019 * 342.75668 * 17 5 4 19 19 O 1.36541 * 131.53192 * 180.16877 * 4 3 2 20 20 H 1.08998 * 109.46801 * 269.72376 * 1 2 3 21 21 H 1.08997 * 109.47263 * 149.72231 * 1 2 3 22 22 H 1.09001 * 109.47036 * 29.72026 * 1 2 3 23 23 H 1.08004 * 119.72005 * 0.03208 * 3 2 1 24 24 H 0.96999 * 120.00308 * 180.02562 * 10 9 7 25 25 H 1.09003 * 109.47444 * 89.99500 * 16 15 2 26 26 H 1.09000 * 109.46995 * 210.00011 * 16 15 2 27 27 H 1.09001 * 109.47021 * 329.99847 * 16 15 2 28 28 H 1.08999 * 110.58502 * 268.48446 * 18 17 5 29 29 H 1.09001 * 110.58313 * 145.58933 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2057 0.0000 4 6 3.5812 1.2268 0.0049 5 6 4.2916 0.0319 -0.0009 6 6 3.5911 -1.1927 -0.0063 7 6 4.2963 -2.4157 -0.0129 8 1 3.8840 -3.2741 -0.5225 9 6 5.5293 -2.5159 0.6409 10 7 5.8540 -1.6452 1.5623 11 14 6.7119 -3.8926 0.1986 12 1 6.1122 -4.7377 -0.8650 13 1 7.9876 -3.3111 -0.2910 14 1 6.9759 -4.7237 1.4006 15 6 2.1830 -1.1853 -0.0057 16 6 1.4225 -2.4864 -0.0110 17 8 5.6238 0.3134 -0.0006 18 6 5.7261 1.6914 -0.4058 19 8 4.4709 2.2625 0.0090 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8874 -0.5181 22 1 -0.3633 0.8925 -0.5095 23 1 1.6451 2.1355 0.0005 24 1 6.7090 -1.7144 2.0153 25 1 1.2384 -2.7955 -1.0400 26 1 2.0079 -3.2514 0.4990 27 1 0.4712 -2.3533 0.5041 28 1 5.8420 1.7653 -1.4871 29 1 6.5565 2.1801 0.1038 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258118590.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -69.320426 kcal Electronic energy + Delta-G solvation = -15117.396573 eV Core-core repulsion = 12584.348659 eV Total energy + Delta-G solvation = -2533.047914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.45004 -39.02252 -36.81542 -35.38680 -32.65976 -32.48875 -28.58917 -27.45740 -26.66213 -25.32137 -22.57908 -21.97669 -19.21049 -18.04383 -17.69404 -17.34929 -16.97516 -16.26596 -15.25535 -14.87963 -14.68132 -14.47478 -13.99560 -13.64315 -13.42036 -13.28378 -13.12774 -12.89442 -12.79436 -12.66924 -12.32647 -12.13790 -11.88345 -11.27160 -11.07403 -10.73453 -9.17810 -8.61345 -8.37685 -6.29459 0.82208 0.92676 1.38383 1.46841 1.53136 2.22708 2.33757 2.73287 3.13580 3.50710 4.02639 4.20045 4.30649 4.43996 4.55704 4.75405 4.80232 4.88460 4.98745 5.10566 5.15062 5.24588 5.27182 5.42045 5.54153 5.77838 5.87126 6.04379 6.21723 6.45559 6.64843 6.93026 7.06460 8.39421 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.014080 C = 0.009534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.317566 B = 1988.214668 C = 2936.014525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.061 4.061 3 C -0.222 4.222 4 C 0.015 3.985 5 C -0.057 4.057 6 C 0.098 3.902 7 C -0.490 4.490 8 H 0.088 0.912 9 C 0.036 3.964 10 N -0.802 5.802 11 Si 0.975 3.025 12 H -0.253 1.253 13 H -0.274 1.274 14 H -0.266 1.266 15 C -0.192 4.192 16 C -0.077 4.077 17 O -0.305 6.305 18 C 0.198 3.802 19 O -0.340 6.340 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.121 0.879 24 H 0.284 0.716 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 0.512 -3.012 4.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.061 4.061 3 C -0.242 4.242 4 C -0.029 4.029 5 C -0.102 4.102 6 C 0.096 3.904 7 C -0.519 4.519 8 H 0.106 0.894 9 C -0.181 4.181 10 N -0.426 5.426 11 Si 0.796 3.204 12 H -0.177 1.177 13 H -0.199 1.199 14 H -0.191 1.191 15 C -0.194 4.194 16 C -0.134 4.134 17 O -0.221 6.221 18 C 0.086 3.914 19 O -0.257 6.257 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.139 0.861 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.119 0.670 -2.728 4.198 hybrid contribution 1.273 -0.011 0.029 1.273 sum -1.846 0.659 -2.699 3.336 Atomic orbital electron populations 1.20723 0.88807 1.03202 1.02541 1.19234 0.96975 0.90850 0.99044 1.19523 0.88068 0.98515 1.18080 1.20032 0.92745 0.84911 1.05186 1.20075 0.81498 0.94620 1.14003 1.17023 0.91348 0.90417 0.91648 1.19594 1.03801 0.97345 1.31145 0.89441 1.26663 0.99421 0.99322 0.92685 1.69819 1.21912 1.34376 1.16542 0.85265 0.77723 0.77977 0.79404 1.17656 1.19903 1.19128 1.19636 0.91711 0.96056 1.11951 1.20419 0.98483 0.93367 1.01123 1.87309 1.22555 1.26883 1.85387 1.25720 0.86981 0.78950 0.99748 1.87101 1.20092 1.32859 1.85669 0.90847 0.90308 0.90935 0.86098 0.90597 0.92115 0.93148 0.90770 0.90408 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 9.15 71.24 0.65 -2.26 15 2 C -0.06 -2.58 5.84 -20.15 -0.12 -2.69 15 3 C -0.22 -10.17 9.70 22.51 0.22 -9.95 15 4 C 0.01 0.77 7.15 22.56 0.16 0.93 15 5 C -0.06 -3.18 6.08 23.15 0.14 -3.04 15 6 C 0.10 5.38 5.46 -21.23 -0.12 5.27 15 7 C -0.49 -26.41 7.88 23.40 0.18 -26.23 15 8 H 0.09 4.45 7.20 -2.91 -0.02 4.43 15 9 C 0.04 1.89 4.86 85.24 0.41 2.30 15 10 N -0.80 -44.34 10.89 21.82 0.24 -44.10 15 11 Si 0.97 39.67 29.60 68.60 2.03 41.70 15 12 H -0.25 -9.85 7.11 99.48 0.71 -9.15 15 13 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 14 H -0.27 -10.30 7.11 99.48 0.71 -9.60 15 15 C -0.19 -9.02 5.90 -19.65 -0.12 -9.13 15 16 C -0.08 -2.95 8.56 71.24 0.61 -2.34 15 17 O -0.31 -16.31 9.07 -72.10 -0.65 -16.97 15 18 C 0.20 8.35 8.90 113.37 1.01 9.36 15 19 O -0.34 -16.13 11.41 -76.53 -0.87 -17.01 15 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.08 2.11 6.63 -2.39 -0.02 2.09 15 22 H 0.07 1.92 8.08 -2.39 -0.02 1.90 15 23 H 0.12 4.85 8.06 -2.91 -0.02 4.83 15 24 H 0.28 14.42 8.30 -92.71 -0.77 13.65 15 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.05 2.04 6.89 -2.39 -0.02 2.02 15 27 H 0.07 2.35 6.64 -2.39 -0.02 2.33 15 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 29 H 0.14 4.67 8.14 -2.39 -0.02 4.65 15 Total: -1.00 -65.35 246.14 4.94 -60.40 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.16 Total: 13.76 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.04 Total: -37.79 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.24 Total: -44.10 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.53 Total: -33.97 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -65.35 4.94 -60.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258118590.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.918 kcal (2) G-P(sol) polarization free energy of solvation -65.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds