Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35657 * 116.99829 * 2 1 4 4 C 1.39184 * 119.90980 * 0.02562 * 3 2 1 5 5 C 1.37575 * 120.09592 * 180.24877 * 4 3 2 6 6 C 1.39969 * 119.90454 * 359.49946 * 5 4 3 7 7 C 1.47569 * 120.09308 * 180.27766 * 6 5 4 8 8 O 1.21827 * 119.99827 * 180.24624 * 7 6 5 9 9 C 1.41754 * 120.00257 * 0.24153 * 7 6 5 10 10 H 1.08003 * 119.99975 * 353.22023 * 9 7 6 11 11 C 1.40343 * 120.00130 * 173.21701 * 9 7 6 12 12 N 1.30525 * 119.99969 * 6.10925 * 11 9 7 13 13 Si 1.86805 * 120.00075 * 186.10676 * 11 9 7 14 14 H 1.48501 * 109.46935 * 94.98474 * 13 11 9 15 15 H 1.48496 * 109.47175 * 214.98869 * 13 11 9 16 16 H 1.48503 * 109.47134 * 334.98915 * 13 11 9 17 17 C 1.39928 * 119.81269 * 0.51516 * 6 5 4 18 18 C 1.37616 * 119.90472 * 359.73750 * 17 6 5 19 19 C 1.50699 * 119.95250 * 179.97438 * 18 17 6 20 20 H 1.08997 * 109.46886 * 299.99729 * 1 2 3 21 21 H 1.09004 * 109.46740 * 59.99201 * 1 2 3 22 22 H 1.08991 * 109.46924 * 179.97438 * 1 2 3 23 23 H 1.07999 * 119.95013 * 359.97438 * 4 3 2 24 24 H 1.08003 * 120.04990 * 179.71880 * 5 4 3 25 25 H 0.97008 * 119.99832 * 179.97438 * 12 11 9 26 26 H 1.08004 * 120.05147 * 179.74953 * 17 6 5 27 27 H 1.09003 * 109.47328 * 270.02037 * 19 18 17 28 28 H 1.09000 * 109.47359 * 30.02221 * 19 18 17 29 29 H 1.09003 * 109.47279 * 150.02159 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2849 2.3748 0.0005 5 6 1.9055 3.6026 -0.0046 6 6 3.3031 3.6782 0.0002 7 6 3.9731 4.9931 0.0008 8 8 5.1897 5.0568 0.0005 9 6 3.2011 6.1819 0.0018 10 1 2.1280 6.1291 -0.1084 11 6 3.8311 7.4277 0.1460 12 7 5.1342 7.5023 0.1594 13 14 2.8049 8.9790 0.3187 14 1 2.6294 9.2987 1.7582 15 1 3.4944 10.1065 -0.3583 16 1 1.4750 8.7649 -0.3065 17 6 4.0633 2.5034 -0.0007 18 6 3.4345 1.2793 -0.0008 19 6 4.2522 0.0134 -0.0024 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2066 2.3156 0.0005 24 1 1.3151 4.5070 -0.0088 25 1 5.5696 8.3634 0.2587 26 1 5.1420 2.5572 -0.0011 27 1 4.4487 -0.2910 -1.0304 28 1 5.1973 0.1907 0.5110 29 1 3.7021 -0.7751 0.5112 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259041809.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -63.980258 kcal Electronic energy + Delta-G solvation = -14253.202006 eV Core-core repulsion = 11720.385659 eV Total energy + Delta-G solvation = -2532.816347 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72522 -37.47131 -35.75340 -32.68906 -32.37465 -29.51448 -27.56272 -27.20517 -25.60214 -22.44383 -21.12660 -19.36697 -17.59388 -16.49365 -15.63319 -15.52573 -15.46168 -14.16535 -13.86459 -13.50285 -13.21130 -12.92607 -12.54060 -12.18926 -11.96432 -11.75353 -11.57729 -11.41188 -11.11456 -11.09620 -10.55317 -10.36539 -10.30189 -9.93402 -8.97340 -8.21764 -7.47325 -7.39859 -6.31423 -4.89996 1.87139 1.99932 3.04180 3.12201 3.15580 3.57595 3.99212 4.02399 4.63918 5.13083 5.24380 5.24782 5.40942 5.52074 5.67807 5.80045 5.87966 6.02124 6.11233 6.16372 6.24361 6.44092 6.72310 6.89510 7.08438 7.25060 7.37781 7.40664 7.85349 8.03912 8.79126 8.84591 10.31035 10.53098 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.043632 B = 0.007323 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.577272 B = 3822.458411 C = 4440.422001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.218 4.218 5 C -0.061 4.061 6 C -0.134 4.134 7 C 0.390 3.610 8 O -0.543 6.543 9 C -0.519 4.519 10 H 0.074 0.926 11 C 0.080 3.920 12 N -0.735 5.735 13 Si 0.906 3.094 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.261 1.261 17 C -0.057 4.057 18 C -0.133 4.133 19 C -0.098 4.098 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.274 0.726 26 H 0.131 0.869 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -9.169 0.070 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.064 3.936 4 C -0.237 4.237 5 C -0.079 4.079 6 C -0.135 4.135 7 C 0.286 3.714 8 O -0.433 6.433 9 C -0.550 4.550 10 H 0.092 0.908 11 C -0.144 4.144 12 N -0.364 5.364 13 Si 0.730 3.270 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.185 1.185 17 C -0.075 4.075 18 C -0.133 4.133 19 C -0.154 4.154 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.111 0.889 23 H 0.137 0.863 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.149 0.851 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.627 -9.278 0.075 12.011 hybrid contribution -1.034 0.937 0.100 1.399 sum -8.662 -8.341 0.175 12.026 Atomic orbital electron populations 1.22948 0.79337 1.03051 1.01212 1.85935 1.20568 1.27628 1.89256 1.18947 0.91698 0.83671 0.99299 1.21120 0.99136 0.92597 1.10805 1.21335 0.94627 0.96521 0.95464 1.21797 0.93705 0.98069 0.99945 1.18070 0.88725 0.85552 0.79063 1.90500 1.15384 1.88277 1.49170 1.20923 0.95485 0.91769 1.46807 0.90805 1.26006 0.94790 1.00706 0.92849 1.69966 1.09549 1.26165 1.30724 0.86365 0.80753 0.80687 0.79171 1.19460 1.20136 1.18504 1.21142 1.00417 0.90139 0.95843 1.19147 0.90295 0.95992 1.07893 1.20529 0.98712 0.94567 1.01640 0.92973 0.92970 0.88922 0.86260 0.85095 0.91507 0.85072 0.92049 0.91956 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.32 -4.94 9.52 -18.67 -0.18 -5.12 15 3 C 0.11 1.95 6.68 -38.89 -0.26 1.69 15 4 C -0.22 -3.87 9.01 -39.47 -0.36 -4.22 15 5 C -0.06 -1.27 9.43 -39.18 -0.37 -1.63 15 6 C -0.13 -3.23 5.89 -104.81 -0.62 -3.84 15 7 C 0.39 11.20 6.90 -34.44 -0.24 10.97 15 8 O -0.54 -17.48 14.92 5.08 0.08 -17.40 15 9 C -0.52 -14.34 8.83 -37.45 -0.33 -14.67 15 10 H 0.07 1.84 6.06 -52.48 -0.32 1.53 15 11 C 0.08 2.15 5.49 -17.32 -0.10 2.06 15 12 N -0.74 -21.26 11.76 55.57 0.65 -20.61 15 13 Si 0.91 19.26 29.57 -169.99 -5.03 14.23 15 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 17 C -0.06 -1.26 9.24 -39.18 -0.36 -1.62 15 18 C -0.13 -2.51 5.89 -104.51 -0.62 -3.13 15 19 C -0.10 -1.50 9.79 36.01 0.35 -1.15 15 20 H 0.05 0.53 7.65 -51.93 -0.40 0.13 15 21 H 0.05 0.53 7.65 -51.93 -0.40 0.13 15 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.12 1.72 6.28 -52.49 -0.33 1.39 15 24 H 0.13 2.58 6.21 -52.48 -0.33 2.25 15 25 H 0.27 7.07 8.29 -40.82 -0.34 6.74 15 26 H 0.13 2.93 7.65 -52.48 -0.40 2.53 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.06 0.89 8.08 -51.93 -0.42 0.47 15 29 H 0.06 0.91 7.53 -51.93 -0.39 0.52 15 LS Contribution 255.71 15.07 3.85 3.85 Total: -1.00 -32.81 255.71 -5.48 -38.29 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -2.96 Total: 0.99 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.90 Total: -14.23 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.65 Total: -20.61 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.10 Total: -22.52 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.81 -5.48 -38.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259041809.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.689 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds