Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86797 * 120.00149 * 2 1 4 4 H 1.48493 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 299.99822 * 3 2 1 6 6 H 1.48504 * 109.47227 * 59.99264 * 3 2 1 7 7 C 1.40541 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99369 * 180.02562 * 7 2 1 9 9 C 1.38950 * 120.00369 * 0.02562 * 7 2 1 10 10 N 1.31573 * 126.65668 * 0.31444 * 9 7 2 11 11 N 1.39168 * 112.32229 * 180.18137 * 10 9 7 12 12 C 1.40119 * 124.27796 * 179.78400 * 11 10 9 13 13 C 1.40453 * 126.14938 * 179.72648 * 12 11 10 14 14 N 1.30760 * 108.17412 * 179.72543 * 13 12 11 15 15 N 1.40040 * 108.42365 * 0.25034 * 14 13 12 16 16 H 0.97000 * 125.96942 * 180.02562 * 15 14 13 17 17 C 1.35067 * 108.06904 * 359.97438 * 15 14 13 18 18 C 1.34770 * 111.44755 * 359.52832 * 11 10 9 19 19 O 1.21288 * 127.13387 * 180.26728 * 18 11 10 20 20 C 1.51449 * 126.65498 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99920 * 0.02562 * 1 2 3 22 22 H 1.08002 * 125.91598 * 359.97438 * 13 12 11 23 23 H 1.08000 * 126.17980 * 179.97438 * 17 15 14 24 24 H 1.08995 * 110.56558 * 61.41592 * 20 9 7 25 25 H 1.09003 * 110.56088 * 298.56929 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.6998 1.3463 0.0006 5 1 1.8812 2.3964 -1.2125 6 1 1.8810 2.3965 1.2124 7 6 2.0085 -1.2172 0.0005 8 1 3.0884 -1.2171 0.0010 9 6 1.3137 -2.4205 0.0005 10 7 0.0069 -2.5730 -0.0057 11 7 -0.3690 -3.9130 0.0004 12 6 -1.6969 -4.3602 0.0002 13 6 -2.1201 -5.6994 0.0008 14 7 -3.4276 -5.7139 0.0063 15 7 -3.8850 -4.3903 0.0036 16 1 -4.8130 -4.1082 0.0068 17 6 -2.8081 -3.5750 -0.0032 18 6 0.7057 -4.7262 0.0010 19 8 0.7061 -5.9391 0.0012 20 6 1.9138 -3.8110 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 -1.4770 -6.5671 0.0011 23 1 -2.8260 -2.4952 -0.0071 24 1 2.5138 -3.9691 0.8967 25 1 2.5136 -3.9691 -0.8958 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259481700.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = 86.965267 kcal Electronic energy + Delta-G solvation = -14258.502367 eV Core-core repulsion = 11660.983917 eV Total energy + Delta-G solvation = -2597.518450 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.71313 -39.21948 -36.03854 -33.88289 -32.00514 -30.71128 -28.31980 -27.39264 -25.91367 -21.70546 -21.28937 -19.87894 -19.13518 -17.29706 -16.58612 -15.39436 -15.14781 -14.90236 -14.07336 -13.95420 -13.61201 -13.30675 -12.92519 -12.18903 -11.98572 -11.42845 -11.35591 -11.00192 -10.94851 -10.47503 -10.32203 -9.66365 -9.41023 -9.15503 -8.46742 -8.13806 -6.87058 -6.78664 -4.76570 2.31874 2.81369 2.94552 3.02108 3.05865 3.25205 3.46733 3.82281 4.05611 4.23717 5.11283 5.20536 5.54008 5.59694 5.78235 6.09598 6.23344 6.28026 6.43656 6.81636 6.93675 7.28685 7.66269 7.79724 8.00758 8.16066 8.43579 8.67273 9.08489 9.82490 10.12101 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038913 B = 0.008817 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.381927 B = 3174.754075 C = 3878.914041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.414 4.414 8 H 0.093 0.907 9 C 0.196 3.804 10 N -0.353 5.353 11 N -0.381 5.381 12 C 0.045 3.955 13 C 0.043 3.957 14 N -0.300 5.300 15 N -0.482 5.482 16 H 0.438 0.562 17 C 0.040 3.960 18 C 0.471 3.529 19 O -0.557 6.557 20 C -0.161 4.161 21 H 0.280 0.720 22 H 0.191 0.809 23 H 0.187 0.813 24 H 0.107 0.893 25 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 0.942 -0.001 1.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.156 4.156 3 Si 0.741 3.259 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.454 4.454 8 H 0.111 0.889 9 C 0.035 3.965 10 N -0.178 5.178 11 N -0.186 5.186 12 C -0.060 4.060 13 C -0.146 4.146 14 N -0.124 5.124 15 N -0.193 5.193 16 H 0.281 0.719 17 C -0.108 4.108 18 C 0.259 3.741 19 O -0.437 6.437 20 C -0.203 4.203 21 H 0.091 0.909 22 H 0.208 0.792 23 H 0.204 0.796 24 H 0.125 0.875 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.762 0.004 0.000 3.762 hybrid contribution 1.394 1.071 0.000 1.758 sum -2.368 1.075 0.000 2.601 Atomic orbital electron populations 1.69820 1.07461 1.28873 1.29447 1.26050 0.94902 1.01235 0.93397 0.86103 0.80695 0.80496 0.78603 1.18238 1.19810 1.19814 1.18496 0.94449 0.87807 1.44608 0.88878 1.21388 0.90447 0.91338 0.93339 1.77740 1.13178 0.86588 1.40335 1.46720 1.01613 1.06952 1.63294 1.17415 0.84105 0.91558 1.12909 1.24005 0.91792 0.97147 1.01619 1.77127 1.11748 0.98181 1.25378 1.45768 1.08103 1.04094 1.61376 0.71876 1.22080 0.85623 0.97729 1.05409 1.21631 0.87003 0.87698 0.77763 1.90551 1.86861 1.12436 1.53859 1.21774 0.97415 0.96616 1.04502 0.90906 0.79202 0.79632 0.87509 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.78 11.94 55.58 0.66 -17.11 15 2 C 0.07 1.61 5.50 -17.21 -0.09 1.51 15 3 Si 0.92 16.82 29.57 -169.99 -5.03 11.79 15 4 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.41 -9.74 9.38 -38.45 -0.36 -10.10 15 8 H 0.09 1.98 7.85 -52.49 -0.41 1.57 15 9 C 0.20 4.80 6.99 -82.07 -0.57 4.23 15 10 N -0.35 -9.14 10.16 33.79 0.34 -8.80 15 11 N -0.38 -9.36 3.72 -9.80 -0.04 -9.40 15 12 C 0.04 1.00 6.88 -84.02 -0.58 0.43 15 13 C 0.04 0.89 11.22 -17.17 -0.19 0.70 15 14 N -0.30 -5.70 12.68 30.73 0.39 -5.31 15 15 N -0.48 -7.90 7.35 30.61 0.23 -7.67 15 16 H 0.44 5.21 8.96 -182.64 -1.64 3.57 15 17 C 0.04 0.77 11.77 -16.91 -0.20 0.57 15 18 C 0.47 11.28 8.31 -10.56 -0.09 11.19 15 19 O -0.56 -13.77 15.90 5.55 0.09 -13.69 15 20 C -0.16 -3.46 6.87 -28.24 -0.19 -3.66 15 21 H 0.28 6.13 8.29 -40.82 -0.34 5.79 15 22 H 0.19 3.92 6.67 -52.49 -0.35 3.57 15 23 H 0.19 3.46 8.06 -52.49 -0.42 3.04 15 24 H 0.11 2.07 8.14 -51.93 -0.42 1.65 15 25 H 0.11 2.08 8.14 -51.93 -0.42 1.65 15 LS Contribution 235.69 15.07 3.55 3.55 Total: -1.00 -29.47 235.69 -4.88 -34.35 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.80 Total: 7.42 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -2.28 Total: 4.86 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 1.59 Total: -48.30 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.47 -4.88 -34.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259481700.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.314 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds