Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86797 * 120.00149 * 2 1 4 4 H 1.48493 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47157 * 299.99822 * 3 2 1 6 6 H 1.48504 * 109.47227 * 59.99264 * 3 2 1 7 7 C 1.40541 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99369 * 180.02562 * 7 2 1 9 9 C 1.38950 * 120.00369 * 0.02562 * 7 2 1 10 10 N 1.31573 * 126.65668 * 0.31444 * 9 7 2 11 11 N 1.39168 * 112.32229 * 180.18137 * 10 9 7 12 12 C 1.40119 * 124.27796 * 179.78400 * 11 10 9 13 13 C 1.40453 * 126.14938 * 179.72648 * 12 11 10 14 14 N 1.30760 * 108.17412 * 179.72543 * 13 12 11 15 15 N 1.40040 * 108.42365 * 0.25034 * 14 13 12 16 16 H 0.97000 * 125.96942 * 180.02562 * 15 14 13 17 17 C 1.35067 * 108.06904 * 359.97438 * 15 14 13 18 18 C 1.34770 * 111.44755 * 359.52832 * 11 10 9 19 19 O 1.21288 * 127.13387 * 180.26728 * 18 11 10 20 20 C 1.51449 * 126.65498 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99920 * 0.02562 * 1 2 3 22 22 H 1.08002 * 125.91598 * 359.97438 * 13 12 11 23 23 H 1.08000 * 126.17980 * 179.97438 * 17 15 14 24 24 H 1.08995 * 110.56558 * 61.41592 * 20 9 7 25 25 H 1.09003 * 110.56088 * 298.56929 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.6998 1.3463 0.0006 5 1 1.8812 2.3964 -1.2125 6 1 1.8810 2.3965 1.2124 7 6 2.0085 -1.2172 0.0005 8 1 3.0884 -1.2171 0.0010 9 6 1.3137 -2.4205 0.0005 10 7 0.0069 -2.5730 -0.0057 11 7 -0.3690 -3.9130 0.0004 12 6 -1.6969 -4.3602 0.0002 13 6 -2.1201 -5.6994 0.0008 14 7 -3.4276 -5.7139 0.0063 15 7 -3.8850 -4.3903 0.0036 16 1 -4.8130 -4.1082 0.0068 17 6 -2.8081 -3.5750 -0.0032 18 6 0.7057 -4.7262 0.0010 19 8 0.7061 -5.9391 0.0012 20 6 1.9138 -3.8110 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 -1.4770 -6.5671 0.0011 23 1 -2.8260 -2.4952 -0.0071 24 1 2.5138 -3.9691 0.8967 25 1 2.5136 -3.9691 -0.8958 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259481700.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = 66.467623 kcal Electronic energy + Delta-G solvation = -14259.391211 eV Core-core repulsion = 11660.983917 eV Total energy + Delta-G solvation = -2598.407295 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.31767 -40.96147 -37.86165 -35.63331 -33.69727 -32.27663 -30.01446 -29.15701 -27.66797 -23.31807 -22.98979 -21.59763 -20.80427 -18.95634 -18.37316 -17.02204 -16.90696 -16.52859 -15.70485 -15.52715 -15.37851 -15.00016 -14.52780 -13.80271 -13.71647 -12.98396 -12.96794 -12.73138 -12.64448 -12.02411 -11.82819 -11.32828 -11.20563 -10.66619 -10.21432 -9.96016 -8.59707 -8.50350 -6.59913 0.73869 1.12799 1.38926 1.53721 1.68461 1.79470 1.82687 2.28991 2.40745 2.48912 3.34615 3.50339 3.87874 3.98037 4.11458 4.53041 4.59744 4.64257 4.82354 5.14853 5.24058 5.55047 5.98359 6.29501 6.35846 6.61581 6.67554 6.87163 7.29630 8.02441 8.42631 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038913 B = 0.008817 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.381927 B = 3174.754075 C = 3878.914041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.430 4.430 8 H 0.113 0.887 9 C 0.173 3.827 10 N -0.385 5.385 11 N -0.387 5.387 12 C -0.002 4.002 13 C 0.035 3.965 14 N -0.297 5.297 15 N -0.452 5.452 16 H 0.460 0.540 17 C 0.060 3.940 18 C 0.455 3.545 19 O -0.577 6.577 20 C -0.152 4.152 21 H 0.287 0.713 22 H 0.186 0.814 23 H 0.194 0.806 24 H 0.127 0.873 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 2.208 0.000 2.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.195 4.195 3 Si 0.816 3.184 4 H -0.170 1.170 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.470 4.470 8 H 0.131 0.869 9 C 0.013 3.987 10 N -0.212 5.212 11 N -0.191 5.191 12 C -0.107 4.107 13 C -0.152 4.152 14 N -0.121 5.121 15 N -0.166 5.166 16 H 0.308 0.692 17 C -0.091 4.091 18 C 0.244 3.756 19 O -0.459 6.459 20 C -0.193 4.193 21 H 0.098 0.902 22 H 0.203 0.797 23 H 0.210 0.790 24 H 0.145 0.855 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.538 1.256 0.002 3.754 hybrid contribution 1.193 0.708 -0.001 1.387 sum -2.344 1.964 0.001 3.058 Atomic orbital electron populations 1.69908 1.09250 1.30346 1.29735 1.27027 0.95591 1.04665 0.92213 0.84928 0.79705 0.75441 0.78331 1.16970 1.19686 1.19694 1.19027 0.95609 0.88064 1.44276 0.86897 1.21853 0.90668 0.92917 0.93237 1.77667 1.14242 0.87380 1.41907 1.46841 1.02532 1.06695 1.63053 1.17881 0.84293 0.92758 1.15733 1.23906 0.92291 0.96632 1.02406 1.77097 1.10854 0.99110 1.25083 1.45791 1.08827 1.02924 1.59081 0.69178 1.22142 0.85522 0.97963 1.03452 1.22028 0.87824 0.87796 0.77960 1.90521 1.87233 1.12981 1.55135 1.21790 0.96820 0.94417 1.06314 0.90204 0.79723 0.78953 0.85519 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.02 11.94 21.93 0.26 -36.75 15 2 C 0.03 1.25 5.50 85.44 0.47 1.72 15 3 Si 1.00 33.11 29.57 68.60 2.03 35.14 15 4 H -0.25 -7.67 7.11 99.48 0.71 -6.96 15 5 H -0.27 -8.93 7.11 99.48 0.71 -8.23 15 6 H -0.27 -8.94 7.11 99.48 0.71 -8.23 15 7 C -0.43 -19.81 9.38 23.00 0.22 -19.59 15 8 H 0.11 4.57 7.85 -2.91 -0.02 4.55 15 9 C 0.17 8.43 6.99 43.01 0.30 8.73 15 10 N -0.39 -20.11 10.16 -47.00 -0.48 -20.58 15 11 N -0.39 -19.20 3.72 -303.32 -1.13 -20.33 15 12 C 0.00 -0.11 6.88 37.85 0.26 0.15 15 13 C 0.04 1.46 11.22 85.39 0.96 2.42 15 14 N -0.30 -10.92 12.68 -56.67 -0.72 -11.64 15 15 N -0.45 -14.00 7.35 -57.07 -0.42 -14.41 15 16 H 0.46 9.71 8.96 -213.36 -1.91 7.80 15 17 C 0.06 2.24 11.77 83.69 0.99 3.22 15 18 C 0.45 22.01 8.31 87.93 0.73 22.75 15 19 O -0.58 -28.92 15.90 -3.05 -0.05 -28.97 15 20 C -0.15 -6.45 6.87 29.62 0.20 -6.25 15 21 H 0.29 12.44 8.29 -92.71 -0.77 11.67 15 22 H 0.19 7.79 6.67 -2.91 -0.02 7.77 15 23 H 0.19 7.02 8.06 -2.91 -0.02 6.99 15 24 H 0.13 4.79 8.14 -2.39 -0.02 4.77 15 25 H 0.13 4.80 8.14 -2.39 -0.02 4.78 15 Total: -1.00 -62.45 235.69 2.96 -59.49 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.66 Total: 24.90 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.12 Total: 13.15 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -2.48 Total: -103.72 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: 2.03 Total: 35.14 kcal Total: -62.45 2.96 -59.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259481700.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.961 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds