Wall clock time and date at job start Mon Mar 30 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30572 * 1 3 3 Si 1.86805 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47032 * 239.99874 * 3 2 1 5 5 H 1.48501 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47004 * 119.99753 * 3 2 1 7 7 C 1.40552 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.38990 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.31536 * 126.64912 * 0.02562 * 9 7 2 11 11 N 1.39173 * 112.32940 * 179.97438 * 10 9 7 12 12 C 1.39763 * 124.28283 * 180.02562 * 11 10 9 13 13 C 1.40524 * 125.98627 * 359.69388 * 12 11 10 14 14 C 1.35165 * 107.87684 * 179.86364 * 13 12 11 15 15 N 1.35042 * 107.89473 * 0.39436 * 14 13 12 16 16 H 0.97003 * 125.96704 * 179.73201 * 15 14 13 17 17 N 1.31376 * 125.99228 * 180.02562 * 12 11 10 18 18 C 1.35111 * 111.48331 * 0.08964 * 11 10 9 19 19 O 1.21278 * 127.30710 * 179.91406 * 18 11 10 20 20 C 1.51448 * 126.65552 * 180.02562 * 9 7 2 21 21 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 22 22 H 1.08000 * 126.06572 * 359.97438 * 13 12 11 23 23 H 1.07992 * 126.05676 * 180.12149 * 14 13 12 24 24 H 1.09002 * 110.56109 * 298.58218 * 20 9 7 25 25 H 1.08995 * 110.55822 * 61.27739 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 3.0935 1.6964 -1.2125 5 1 1.2747 2.7465 0.0006 6 1 3.0934 1.6964 1.2125 7 6 2.0085 -1.2172 -0.0005 8 1 3.0886 -1.2172 -0.0001 9 6 1.3137 -2.4209 -0.0005 10 7 0.0072 -2.5733 -0.0005 11 7 -0.3689 -3.9133 -0.0011 12 6 -1.6935 -4.3592 -0.0018 13 6 -2.8388 -3.5451 0.0041 14 6 -3.9223 -4.3532 -0.0018 15 7 -3.4866 -5.6314 -0.0023 16 1 -4.0460 -6.4239 -0.0024 17 7 -2.0860 -5.6130 -0.0018 18 6 0.7079 -4.7294 0.0004 19 8 0.7110 -5.9422 0.0019 20 6 1.9139 -3.8114 -0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 -2.8512 -2.4652 0.0104 23 1 -4.9538 -4.0333 -0.0014 24 1 2.5139 -3.9693 -0.8967 25 1 2.5159 -3.9684 0.8944 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592338.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:46 Heat of formation + Delta-G solvation = 69.351845 kcal Electronic energy + Delta-G solvation = -14244.567353 eV Core-core repulsion = 11646.285128 eV Total energy + Delta-G solvation = -2598.282225 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.19056 -41.02453 -37.98268 -35.70261 -33.87468 -31.02847 -30.88845 -29.29082 -27.96162 -23.86296 -22.58328 -21.33141 -20.33916 -19.06624 -18.43291 -17.50951 -17.04718 -16.59946 -15.53937 -15.45263 -15.39709 -14.58863 -14.31690 -13.97376 -13.79194 -13.00624 -13.00128 -12.72833 -12.67156 -11.94700 -11.71670 -11.35210 -11.24524 -10.51034 -10.01348 -9.76622 -9.04164 -8.50782 -6.67941 0.76735 1.20095 1.47278 1.52905 1.54665 1.66279 1.86931 2.29251 2.48658 2.60564 3.31970 3.41493 3.84507 4.08355 4.23655 4.56785 4.63112 4.80130 4.89157 5.17189 5.27854 5.48283 5.94066 6.17802 6.57124 6.64124 6.74090 6.85994 7.16521 7.96861 8.41729 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038918 B = 0.008821 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.295892 B = 3173.630018 C = 3877.713111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.427 4.427 8 H 0.118 0.882 9 C 0.172 3.828 10 N -0.378 5.378 11 N -0.393 5.393 12 C 0.304 3.696 13 C -0.294 4.294 14 C 0.103 3.897 15 N -0.464 5.464 16 H 0.457 0.543 17 N -0.358 5.358 18 C 0.458 3.542 19 O -0.557 6.557 20 C -0.150 4.150 21 H 0.289 0.711 22 H 0.142 0.858 23 H 0.240 0.760 24 H 0.132 0.868 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 1.266 -0.005 4.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.198 4.198 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.466 4.466 8 H 0.136 0.864 9 C 0.014 3.986 10 N -0.206 5.206 11 N -0.200 5.200 12 C 0.050 3.950 13 C -0.325 4.325 14 C -0.045 4.045 15 N -0.177 5.177 16 H 0.304 0.696 17 N -0.192 5.192 18 C 0.246 3.754 19 O -0.435 6.435 20 C -0.192 4.192 21 H 0.100 0.900 22 H 0.160 0.840 23 H 0.256 0.744 24 H 0.149 0.851 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.924 -0.164 -0.004 4.926 hybrid contribution 0.431 0.450 0.000 0.623 sum -4.493 0.286 -0.004 4.502 Atomic orbital electron populations 1.69917 1.09414 1.30713 1.28994 1.27128 0.95590 1.04918 0.92141 0.84971 0.78288 0.74415 0.80368 1.17887 1.20043 1.17902 1.19037 0.95752 0.87822 1.44025 0.86387 1.21939 0.90502 0.92960 0.93233 1.77854 1.14256 0.85563 1.42895 1.47106 1.01660 1.07462 1.63805 1.19225 0.85409 0.91678 0.98722 1.21382 0.89692 1.01333 1.20074 1.23158 1.01116 0.82986 0.97256 1.45989 1.03185 1.08443 1.60091 0.69555 1.77626 0.91746 1.16982 1.32862 1.22501 0.88195 0.87934 0.76772 1.90589 1.87111 1.13246 1.52523 1.21801 0.96290 0.94301 1.06760 0.90022 0.83976 0.74397 0.85064 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.41 11.94 21.94 0.26 -38.14 15 2 C 0.03 1.17 5.51 85.44 0.47 1.64 15 3 Si 1.00 33.63 29.57 68.60 2.03 35.66 15 4 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 5 H -0.28 -9.11 7.11 99.48 0.71 -8.41 15 6 H -0.26 -8.19 7.11 99.48 0.71 -7.49 15 7 C -0.43 -20.12 9.38 23.01 0.22 -19.90 15 8 H 0.12 4.80 7.86 -2.91 -0.02 4.78 15 9 C 0.17 8.78 6.99 43.02 0.30 9.08 15 10 N -0.38 -21.01 10.17 -46.99 -0.48 -21.49 15 11 N -0.39 -21.38 3.72 -306.33 -1.14 -22.52 15 12 C 0.30 15.21 7.84 133.45 1.05 16.26 15 13 C -0.29 -12.15 10.59 22.12 0.23 -11.92 15 14 C 0.10 2.90 11.98 83.49 1.00 3.90 15 15 N -0.46 -14.42 7.35 -57.63 -0.42 -14.85 15 16 H 0.46 9.58 8.96 -213.33 -1.91 7.67 15 17 N -0.36 -16.56 11.87 -54.55 -0.65 -17.21 15 18 C 0.46 24.20 8.35 87.88 0.73 24.94 15 19 O -0.56 -31.36 17.17 -3.02 -0.05 -31.42 15 20 C -0.15 -6.71 6.86 29.62 0.20 -6.51 15 21 H 0.29 13.08 8.29 -92.71 -0.77 12.31 15 22 H 0.14 6.18 8.06 -2.91 -0.02 6.16 15 23 H 0.24 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.13 5.18 8.14 -2.39 -0.02 5.16 15 25 H 0.13 5.18 8.14 -2.39 -0.02 5.16 15 Total: -1.00 -74.29 238.11 3.08 -71.21 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.67 Total: 21.26 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 4.20 Total: 17.49 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -2.43 Total: -114.21 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Total: -74.29 3.08 -71.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592338.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.559 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds