Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35711 * 126.31234 * 2 1 4 4 N 1.30308 * 108.90352 * 180.02562 * 3 2 1 5 5 C 1.34889 * 109.18552 * 0.02562 * 4 3 2 6 6 C 1.48288 * 126.10881 * 179.97438 * 5 4 3 7 7 N 1.31359 * 126.22182 * 180.02562 * 6 5 4 8 8 O 1.21259 * 110.51839 * 179.70294 * 7 6 5 9 9 C 1.34744 * 109.77779 * 0.43516 * 8 7 6 10 10 C 1.40355 * 126.66958 * 179.83685 * 9 8 7 11 11 H 1.08005 * 119.99727 * 179.68323 * 10 9 8 12 12 C 1.40419 * 120.00756 * 359.41118 * 10 9 8 13 13 N 1.30537 * 119.99384 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00692 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99620 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99862 * 14 12 10 18 18 N 1.33187 * 106.65574 * 359.57233 * 9 8 7 19 19 C 1.35917 * 107.79128 * 0.26493 * 5 4 3 20 20 H 1.08999 * 109.46796 * 89.96910 * 1 2 3 21 21 H 1.08992 * 109.46738 * 209.97270 * 1 2 3 22 22 H 1.09004 * 109.46630 * 329.96807 * 1 2 3 23 23 H 1.08007 * 125.54979 * 359.97438 * 3 2 1 24 24 H 0.97000 * 119.99431 * 180.02562 * 13 12 10 25 25 H 1.07997 * 126.62915 * 179.73766 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0936 0.0000 4 7 3.5121 0.7037 -0.0006 5 6 3.5539 -0.6445 -0.0015 6 6 4.7784 -1.4809 -0.0029 7 7 4.8217 -2.7938 -0.0043 8 8 5.9708 -3.1811 -0.0111 9 6 6.8079 -2.1252 -0.0052 10 6 8.2108 -2.1678 -0.0068 11 1 8.7789 -1.2492 -0.0067 12 6 8.8759 -3.4045 -0.0027 13 7 8.1892 -4.5147 0.0031 14 14 10.7430 -3.4611 -0.0041 15 1 11.2801 -2.0767 -0.0104 16 1 11.2176 -4.1712 1.2106 17 1 11.2154 -4.1805 -1.2143 18 7 6.0452 -1.0334 -0.0035 19 6 2.2732 -1.0998 -0.0075 20 1 -0.3633 0.0006 -1.0277 21 1 -0.3632 -0.8902 0.5134 22 1 -0.3633 0.8898 0.5144 23 1 1.9325 2.1200 -0.0004 24 1 8.6486 -5.3690 0.0062 25 1 1.9564 -2.1322 -0.0137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259611195.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 86.791452 kcal Electronic energy + Delta-G solvation = -13909.973154 eV Core-core repulsion = 11312.447166 eV Total energy + Delta-G solvation = -2597.525987 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.98213 -42.91936 -36.07310 -35.89265 -34.66117 -32.69242 -30.39963 -28.44589 -27.89689 -24.59377 -23.59308 -21.82744 -21.70113 -19.69296 -17.95724 -17.89141 -17.29456 -16.62237 -16.54661 -15.52534 -15.11892 -14.84524 -14.43878 -13.85923 -13.60974 -13.43782 -13.33696 -13.07345 -12.21214 -12.12336 -11.93230 -11.60176 -11.08573 -10.92969 -10.67416 -10.41771 -9.27892 -8.94599 -7.09141 0.60178 1.08441 1.41877 1.50157 1.63911 1.83752 1.85614 2.17823 2.58513 3.07047 3.12048 3.30770 3.74351 4.03216 4.13183 4.24663 4.51575 4.76964 4.79435 4.95021 5.11010 5.22357 5.59781 5.89100 6.08543 6.21780 6.33852 6.45944 7.06790 8.08326 8.28654 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.091782 B = 0.006095 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.997250 B = 4592.677054 C = 4882.522078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.458 5.458 3 C 0.197 3.803 4 N -0.518 5.518 5 C 0.035 3.965 6 C 0.239 3.761 7 N -0.483 5.483 8 O 0.019 5.981 9 C 0.269 3.731 10 C -0.433 4.433 11 H 0.119 0.881 12 C 0.028 3.972 13 N -0.795 5.795 14 Si 1.025 2.975 15 H -0.250 1.250 16 H -0.254 1.254 17 H -0.254 1.254 18 N -0.628 5.628 19 C 0.002 3.998 20 H 0.094 0.906 21 H 0.097 0.903 22 H 0.121 0.879 23 H 0.260 0.740 24 H 0.307 0.693 25 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 4.598 0.059 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.140 5.140 3 C -0.087 4.087 4 N -0.237 5.237 5 C -0.093 4.093 6 C -0.033 4.033 7 N -0.219 5.219 8 O -0.024 6.024 9 C 0.080 3.920 10 C -0.470 4.470 11 H 0.137 0.863 12 C -0.194 4.194 13 N -0.422 5.422 14 Si 0.841 3.159 15 H -0.173 1.173 16 H -0.178 1.178 17 H -0.178 1.178 18 N -0.372 5.372 19 C -0.137 4.137 20 H 0.112 0.888 21 H 0.116 0.884 22 H 0.139 0.861 23 H 0.276 0.724 24 H 0.118 0.882 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.898 4.805 0.067 11.911 hybrid contribution 0.196 -0.834 -0.017 0.856 sum -10.702 3.972 0.049 11.415 Atomic orbital electron populations 1.22506 0.72376 1.06948 1.05429 1.45773 1.09708 1.05093 1.53433 1.26095 0.83650 0.95514 1.03393 1.70159 1.22526 1.10699 1.20333 1.17454 0.88671 0.89790 1.13415 1.22886 0.92246 0.88317 0.99830 1.74466 1.01506 1.12891 1.33010 1.85417 1.09918 1.34487 1.72610 1.24877 0.95948 0.79337 0.91876 1.19149 0.84931 0.96755 1.46162 0.86288 1.27418 1.08841 0.92888 0.90209 1.69704 1.42217 1.00423 1.29841 0.84537 0.71112 0.80521 0.79745 1.17271 1.17838 1.17836 1.72481 1.00035 1.27434 1.37270 1.22613 0.89221 0.94223 1.07692 0.88766 0.88448 0.86092 0.72394 0.88161 0.78896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 11.17 127.77 1.43 2.13 15 2 N -0.46 -11.37 3.16 -551.31 -1.74 -13.11 15 3 C 0.20 5.58 12.57 180.10 2.26 7.84 15 4 N -0.52 -22.75 11.28 -188.88 -2.13 -24.89 15 5 C 0.03 1.67 7.05 40.81 0.29 1.95 15 6 C 0.24 14.17 8.05 137.36 1.11 15.28 15 7 N -0.48 -29.17 12.17 -55.97 -0.68 -29.85 15 8 O 0.02 1.20 9.71 64.33 0.62 1.83 15 9 C 0.27 17.02 7.80 85.06 0.66 17.68 15 10 C -0.43 -24.65 9.48 23.32 0.22 -24.43 15 11 H 0.12 6.42 7.85 -2.91 -0.02 6.40 15 12 C 0.03 1.41 5.50 85.42 0.47 1.88 15 13 N -0.79 -41.87 12.05 21.90 0.26 -41.61 15 14 Si 1.02 36.17 29.56 68.60 2.03 38.20 15 15 H -0.25 -8.55 7.11 99.48 0.71 -7.85 15 16 H -0.25 -8.37 7.11 99.48 0.71 -7.67 15 17 H -0.25 -8.37 7.11 99.48 0.71 -7.67 15 18 N -0.63 -40.15 11.64 -305.01 -3.55 -43.70 15 19 C 0.00 0.07 11.49 83.43 0.96 1.03 15 20 H 0.09 0.73 8.14 -2.39 -0.02 0.71 15 21 H 0.10 0.84 8.14 -2.39 -0.02 0.83 15 22 H 0.12 0.53 8.14 -2.39 -0.02 0.51 15 23 H 0.26 4.05 8.06 -2.91 -0.02 4.02 15 24 H 0.31 13.93 8.29 -92.71 -0.77 13.16 15 25 H 0.19 6.18 8.06 -2.91 -0.02 6.16 15 Total: -1.00 -84.59 240.69 3.44 -81.15 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.22 Total: 8.61 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 7.40 Total: 23.36 kcal Atomic # 7 Polarization: -145.32 SS G_CDS: -7.84 Total: -153.15 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.62 Total: 1.83 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -84.59 3.44 -81.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259611195.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.940 kcal (2) G-P(sol) polarization free energy of solvation -84.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds