Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33687 * 126.06857 * 2 1 4 4 C 1.30647 * 109.55949 * 180.30947 * 3 2 1 5 5 N 1.34887 * 109.01618 * 359.72987 * 4 3 2 6 6 H 0.97002 * 126.45066 * 179.97438 * 5 4 3 7 7 C 1.36103 * 126.06458 * 179.85291 * 2 1 3 8 8 C 1.47866 * 126.77073 * 359.96126 * 7 2 1 9 9 N 1.31507 * 126.23200 * 359.40361 * 8 7 2 10 10 O 1.21267 * 110.48289 * 179.83651 * 9 8 7 11 11 C 1.34747 * 109.81408 * 0.43255 * 10 9 8 12 12 C 1.40358 * 126.65219 * 179.71758 * 11 10 9 13 13 H 1.08000 * 120.00221 * 180.02562 * 12 11 10 14 14 C 1.40407 * 120.00114 * 0.02562 * 12 11 10 15 15 N 1.30540 * 119.99965 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46941 * 60.00564 * 16 14 12 18 18 H 1.48500 * 109.46936 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47160 * 300.00109 * 16 14 12 20 20 N 1.33165 * 106.69320 * 359.72876 * 11 10 9 21 21 H 1.08994 * 109.47229 * 270.14559 * 1 2 3 22 22 H 1.09006 * 109.47186 * 30.15113 * 1 2 3 23 23 H 1.09006 * 109.47091 * 150.14724 * 1 2 3 24 24 H 1.08002 * 125.49271 * 179.69500 * 4 3 2 25 25 H 0.97001 * 119.99819 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2941 1.0806 0.0000 4 6 3.5467 0.7094 -0.0066 5 7 3.6057 -0.6382 -0.0052 6 1 4.4104 -1.1798 -0.0094 7 6 2.3082 -1.1002 0.0028 8 6 1.8719 -2.5130 0.0073 9 7 0.6290 -2.9426 0.0202 10 8 0.5990 -4.1549 0.0172 11 6 1.8550 -4.6428 0.0110 12 6 2.2282 -5.9959 0.0116 13 1 3.2734 -6.2678 0.0066 14 6 1.2427 -6.9960 0.0186 15 7 -0.0206 -6.6674 0.0241 16 14 1.7394 -8.7968 0.0201 17 1 2.5517 -9.0852 1.2293 18 1 0.5214 -9.6462 0.0285 19 1 2.5400 -9.0905 -1.1957 20 7 2.6734 -3.5924 0.0046 21 1 -0.3633 0.0026 1.0276 22 1 -0.3634 0.8887 -0.5162 23 1 -0.3633 -0.8913 -0.5116 24 1 4.3978 1.3743 -0.0129 25 1 -0.7014 -7.3584 0.0293 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259648791.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = 96.870060 kcal Electronic energy + Delta-G solvation = -14159.374827 eV Core-core repulsion = 11562.285881 eV Total energy + Delta-G solvation = -2597.088946 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.11950 -41.55778 -34.23668 -33.85361 -32.76529 -31.29651 -29.61941 -26.66056 -26.44156 -22.81170 -21.66329 -20.94794 -19.47729 -18.27869 -16.89813 -15.98714 -15.53361 -14.94734 -14.71726 -14.19147 -13.50393 -13.29375 -12.43682 -12.31121 -11.81456 -11.76463 -11.53668 -11.51914 -10.64588 -10.39406 -10.27515 -9.94743 -9.76749 -9.47145 -9.12949 -8.68696 -7.54728 -7.18083 -5.14977 2.00102 2.75122 2.90323 2.94331 3.23237 3.38346 3.41328 3.66085 4.09716 4.76540 4.91902 5.00595 5.24453 5.44961 5.66154 5.90142 6.25021 6.35617 6.54649 6.69339 6.75622 6.97473 7.22021 7.71121 7.74085 7.94576 8.15577 8.33341 8.35892 9.80657 10.18870 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.066646 B = 0.007056 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.027466 B = 3967.049136 C = 4371.925001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.030 3.970 3 N -0.496 5.496 4 C 0.181 3.819 5 N -0.551 5.551 6 H 0.425 0.575 7 C 0.080 3.920 8 C 0.220 3.780 9 N -0.439 5.439 10 O 0.053 5.947 11 C 0.307 3.693 12 C -0.414 4.414 13 H 0.113 0.887 14 C 0.070 3.930 15 N -0.760 5.760 16 Si 0.938 3.062 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.259 1.259 20 N -0.617 5.617 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.209 0.791 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 3.160 -0.096 4.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 N -0.216 5.216 4 C -0.103 4.103 5 N -0.155 5.155 6 H 0.264 0.736 7 C -0.037 4.037 8 C -0.052 4.052 9 N -0.167 5.167 10 O 0.004 5.996 11 C 0.118 3.882 12 C -0.451 4.451 13 H 0.131 0.869 14 C -0.155 4.155 15 N -0.387 5.387 16 Si 0.761 3.239 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.183 1.183 20 N -0.362 5.362 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.225 0.775 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.954 4.567 -0.084 5.440 hybrid contribution 1.047 -2.043 0.023 2.296 sum 4.001 2.524 -0.061 4.731 Atomic orbital electron populations 1.20082 0.87117 1.02855 1.02275 1.20743 0.96622 0.86869 1.06009 1.70017 1.00487 1.30616 1.20520 1.24806 0.97260 0.81848 1.06348 1.43060 1.08206 1.08305 1.55880 0.73612 1.17825 0.83817 0.89983 1.12114 1.22062 0.87792 0.91649 1.03674 1.74668 1.19618 0.93804 1.28629 1.85542 1.30832 1.12423 1.70845 1.24048 0.78131 0.95425 0.90643 1.18551 0.95891 0.84590 1.46103 0.86893 1.26201 0.94158 1.03349 0.91808 1.69626 1.01143 1.37795 1.30116 0.85856 0.79213 0.78449 0.80431 1.18338 1.19736 1.18329 1.72389 1.30159 0.96074 1.37619 0.91654 0.91827 0.89776 0.77465 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 9.99 36.01 0.36 -0.85 15 2 C 0.03 0.62 7.13 -82.55 -0.59 0.03 15 3 N -0.50 -9.17 11.22 -10.65 -0.12 -9.29 15 4 C 0.18 2.73 13.02 -90.39 -1.18 1.55 15 5 N -0.55 -9.42 6.19 -10.65 -0.07 -9.48 15 6 H 0.43 6.31 8.96 -40.82 -0.37 5.95 15 7 C 0.08 1.73 7.19 -82.04 -0.59 1.14 15 8 C 0.22 5.61 7.99 -156.44 -1.25 4.35 15 9 N -0.44 -11.74 10.34 31.46 0.33 -11.41 15 10 O 0.05 1.51 9.71 15.15 0.15 1.66 15 11 C 0.31 8.50 7.80 -16.32 -0.13 8.37 15 12 C -0.41 -10.54 9.48 -37.97 -0.36 -10.90 15 13 H 0.11 2.69 7.85 -52.49 -0.41 2.28 15 14 C 0.07 1.64 5.50 -17.28 -0.10 1.55 15 15 N -0.76 -18.69 12.05 55.57 0.67 -18.02 15 16 Si 0.94 16.93 29.56 -169.99 -5.03 11.90 15 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 18 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 19 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 20 N -0.62 -16.48 11.64 -11.65 -0.14 -16.62 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.08 1.69 6.62 -51.93 -0.34 1.35 15 24 H 0.21 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.29 6.41 8.29 -40.82 -0.34 6.07 15 LS Contribution 236.21 15.07 3.56 3.56 Total: -1.00 -30.68 236.21 -6.00 -36.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -1.52 Total: 5.79 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.83 Total: 5.24 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: 0.67 Total: -64.82 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.15 Total: 1.66 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.68 -6.00 -36.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648791.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.549 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds