Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33687 * 126.06857 * 2 1 4 4 C 1.30647 * 109.55949 * 180.30947 * 3 2 1 5 5 N 1.34887 * 109.01618 * 359.72987 * 4 3 2 6 6 H 0.97002 * 126.45066 * 179.97438 * 5 4 3 7 7 C 1.36103 * 126.06458 * 179.85291 * 2 1 3 8 8 C 1.47866 * 126.77073 * 359.96126 * 7 2 1 9 9 N 1.31507 * 126.23200 * 359.40361 * 8 7 2 10 10 O 1.21267 * 110.48289 * 179.83651 * 9 8 7 11 11 C 1.34747 * 109.81408 * 0.43255 * 10 9 8 12 12 C 1.40358 * 126.65219 * 179.71758 * 11 10 9 13 13 H 1.08000 * 120.00221 * 180.02562 * 12 11 10 14 14 C 1.40407 * 120.00114 * 0.02562 * 12 11 10 15 15 N 1.30540 * 119.99965 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46941 * 60.00564 * 16 14 12 18 18 H 1.48500 * 109.46936 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47160 * 300.00109 * 16 14 12 20 20 N 1.33165 * 106.69320 * 359.72876 * 11 10 9 21 21 H 1.08994 * 109.47229 * 270.14559 * 1 2 3 22 22 H 1.09006 * 109.47186 * 30.15113 * 1 2 3 23 23 H 1.09006 * 109.47091 * 150.14724 * 1 2 3 24 24 H 1.08002 * 125.49271 * 179.69500 * 4 3 2 25 25 H 0.97001 * 119.99819 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2941 1.0806 0.0000 4 6 3.5467 0.7094 -0.0066 5 7 3.6057 -0.6382 -0.0052 6 1 4.4104 -1.1798 -0.0094 7 6 2.3082 -1.1002 0.0028 8 6 1.8719 -2.5130 0.0073 9 7 0.6290 -2.9426 0.0202 10 8 0.5990 -4.1549 0.0172 11 6 1.8550 -4.6428 0.0110 12 6 2.2282 -5.9959 0.0116 13 1 3.2734 -6.2678 0.0066 14 6 1.2427 -6.9960 0.0186 15 7 -0.0206 -6.6674 0.0241 16 14 1.7394 -8.7968 0.0201 17 1 2.5517 -9.0852 1.2293 18 1 0.5214 -9.6462 0.0285 19 1 2.5400 -9.0905 -1.1957 20 7 2.6734 -3.5924 0.0046 21 1 -0.3633 0.0026 1.0276 22 1 -0.3634 0.8887 -0.5162 23 1 -0.3633 -0.8913 -0.5116 24 1 4.3978 1.3743 -0.0129 25 1 -0.7014 -7.3584 0.0293 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259648791.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = 74.498852 kcal Electronic energy + Delta-G solvation = -14160.344915 eV Core-core repulsion = 11562.285881 eV Total energy + Delta-G solvation = -2598.059034 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.06293 -42.98312 -36.12110 -35.76139 -34.20556 -33.05335 -31.29773 -28.54674 -28.02707 -24.49505 -23.57019 -22.47008 -21.13411 -19.85710 -18.51623 -17.96830 -17.35516 -16.69802 -16.18403 -15.70058 -15.08226 -14.90509 -13.89563 -13.77144 -13.66330 -13.47167 -13.09413 -13.05493 -12.30612 -12.24444 -12.02785 -11.63168 -11.28379 -11.06995 -10.94218 -10.53446 -9.17422 -8.97710 -7.14269 0.38861 1.07673 1.41095 1.59608 1.67316 1.93271 2.00455 2.14395 2.29962 3.00149 3.12155 3.36780 3.65223 3.90565 4.29529 4.36501 4.78111 4.91201 4.94120 5.01559 5.07477 5.25992 5.60668 5.79430 5.99337 6.20788 6.40509 6.45831 6.93883 8.03271 8.20046 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.066646 B = 0.007056 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.027466 B = 3967.049136 C = 4371.925001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.035 3.965 3 N -0.522 5.522 4 C 0.224 3.776 5 N -0.545 5.545 6 H 0.435 0.565 7 C 0.025 3.975 8 C 0.228 3.772 9 N -0.463 5.463 10 O 0.020 5.980 11 C 0.274 3.726 12 C -0.429 4.429 13 H 0.125 0.875 14 C 0.029 3.971 15 N -0.792 5.792 16 Si 1.022 2.978 17 H -0.251 1.251 18 H -0.260 1.260 19 H -0.250 1.250 20 N -0.636 5.636 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.271 0.729 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 3.127 -0.084 6.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 N -0.242 5.242 4 C -0.060 4.060 5 N -0.149 5.149 6 H 0.275 0.725 7 C -0.091 4.091 8 C -0.044 4.044 9 N -0.197 5.197 10 O -0.024 6.024 11 C 0.086 3.914 12 C -0.466 4.466 13 H 0.142 0.858 14 C -0.193 4.193 15 N -0.418 5.418 16 Si 0.838 3.162 17 H -0.174 1.174 18 H -0.184 1.184 19 H -0.174 1.174 20 N -0.382 5.382 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.286 0.714 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.462 4.505 -0.072 6.341 hybrid contribution 0.632 -1.890 0.017 1.993 sum 5.094 2.615 -0.055 5.727 Atomic orbital electron populations 1.20076 0.86723 1.02822 1.02575 1.21037 0.97371 0.87194 1.04239 1.70098 1.01714 1.29815 1.22597 1.26095 0.97887 0.81375 1.00617 1.43086 1.07097 1.09159 1.55602 0.72470 1.17757 0.86172 0.88498 1.16716 1.22630 0.87326 0.93186 1.01250 1.74601 1.20497 0.93355 1.31265 1.85479 1.31275 1.13187 1.72483 1.24677 0.78394 0.96653 0.91643 1.19131 0.97224 0.84568 1.45716 0.85772 1.27379 0.93488 1.08205 0.90264 1.69690 1.02655 1.40250 1.29254 0.84650 0.79336 0.71299 0.80871 1.17427 1.18373 1.17404 1.72349 1.30423 0.96361 1.39064 0.91164 0.89528 0.91984 0.71376 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.39 9.99 71.24 0.71 -1.68 15 2 C 0.03 1.40 7.13 41.78 0.30 1.70 15 3 N -0.52 -17.97 11.22 -187.61 -2.10 -20.08 15 4 C 0.22 5.91 13.02 180.27 2.35 8.26 15 5 N -0.55 -17.65 6.19 -187.60 -1.16 -18.81 15 6 H 0.43 12.16 8.96 -92.71 -0.83 11.33 15 7 C 0.03 1.10 7.19 40.27 0.29 1.38 15 8 C 0.23 12.03 7.99 137.16 1.10 13.13 15 9 N -0.46 -26.01 10.34 -55.91 -0.58 -26.59 15 10 O 0.02 1.18 9.71 64.29 0.62 1.80 15 11 C 0.27 15.75 7.80 85.06 0.66 16.41 15 12 C -0.43 -22.24 9.48 23.31 0.22 -22.02 15 13 H 0.12 5.93 7.85 -2.91 -0.02 5.91 15 14 C 0.03 1.36 5.50 85.41 0.47 1.83 15 15 N -0.79 -39.45 12.05 21.90 0.26 -39.18 15 16 Si 1.02 33.41 29.56 68.60 2.03 35.43 15 17 H -0.25 -7.83 7.11 99.48 0.71 -7.13 15 18 H -0.26 -7.91 7.11 99.48 0.71 -7.20 15 19 H -0.25 -7.82 7.11 99.48 0.71 -7.11 15 20 N -0.64 -35.08 11.64 -305.03 -3.55 -38.63 15 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.09 2.74 8.14 -2.38 -0.02 2.72 15 23 H 0.06 2.59 6.62 -2.38 -0.02 2.57 15 24 H 0.27 3.40 8.06 -2.91 -0.02 3.37 15 25 H 0.31 13.36 8.29 -92.71 -0.77 12.59 15 Total: -1.00 -69.54 236.21 2.04 -67.50 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.42 Total: 19.54 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.10 Total: 19.01 kcal Atomic # 7 Polarization: -136.16 SS G_CDS: -7.13 Total: -143.29 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.62 Total: 1.80 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.43 kcal Total: -69.54 2.04 -67.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648791.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.000 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds