Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48500 * 109.46933 * 274.18399 * 3 2 1 5 5 H 1.48498 * 109.46970 * 34.18262 * 3 2 1 6 6 H 1.48497 * 109.47049 * 154.18352 * 3 2 1 7 7 C 1.38790 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00066 * 341.04842 * 7 2 1 9 9 N 1.37272 * 120.00035 * 161.04406 * 7 2 1 10 10 C 1.38378 * 125.95232 * 340.17920 * 9 7 2 11 11 C 1.33173 * 107.91409 * 179.73313 * 10 9 7 12 12 N 1.38659 * 107.85080 * 359.97438 * 11 10 9 13 13 C 1.40324 * 126.00851 * 179.97438 * 12 11 10 14 14 C 1.40396 * 125.96646 * 5.02451 * 13 12 11 15 15 C 1.35242 * 107.86711 * 179.97438 * 14 13 12 16 16 N 1.34965 * 107.85825 * 359.97438 * 15 14 13 17 17 H 0.97000 * 125.97902 * 180.02562 * 16 15 14 18 18 N 1.31208 * 125.97627 * 184.71166 * 13 12 11 19 19 C 1.34751 * 125.94996 * 159.86477 * 9 7 2 20 20 O 1.21710 * 125.92462 * 0.26498 * 19 9 7 21 21 H 0.96999 * 119.99199 * 359.97438 * 1 2 3 22 22 H 1.07992 * 126.04049 * 359.75102 * 10 9 7 23 23 H 1.08005 * 126.07359 * 179.97438 * 11 10 9 24 24 H 1.07993 * 126.06532 * 359.96485 * 14 13 12 25 25 H 1.08000 * 126.06668 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4079 2.0974 -1.3964 5 1 1.4934 2.6255 0.7866 6 1 3.5878 1.4161 0.6097 7 6 2.0087 -1.2020 -0.0005 8 1 1.5125 -2.1121 0.3028 9 7 3.3256 -1.2341 -0.3867 10 6 3.9734 -0.2751 -1.1452 11 6 5.2381 -0.6619 -1.3015 12 7 5.3977 -1.8703 -0.6406 13 6 6.5829 -2.6174 -0.5619 14 6 7.8384 -2.2260 -1.0535 15 6 8.7177 -3.2171 -0.7821 16 7 8.0491 -4.1999 -0.1428 17 1 8.4283 -5.0350 0.1732 18 7 6.7128 -3.8011 -0.0110 19 6 4.2141 -2.2022 -0.0882 20 8 3.9872 -3.2024 0.5670 21 1 -0.4849 0.8401 0.0004 22 1 3.5316 0.6276 -1.5404 23 1 6.0035 -0.1290 -1.8462 24 1 8.0623 -1.2983 -1.5589 25 1 9.7684 -3.2210 -1.0318 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259652784.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 90.419648 kcal Electronic energy + Delta-G solvation = -14414.365106 eV Core-core repulsion = 11816.996450 eV Total energy + Delta-G solvation = -2597.368657 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.41072 -41.89610 -37.68148 -36.73694 -34.43454 -32.02548 -31.00153 -29.76899 -27.64212 -23.91168 -23.69706 -21.71369 -20.75039 -19.80490 -18.93401 -18.11028 -17.40466 -16.96321 -16.42467 -15.70157 -15.56595 -14.96153 -14.58760 -14.41084 -14.18567 -14.01305 -13.28226 -12.97706 -12.68425 -12.14611 -11.76677 -11.74349 -11.18938 -10.90157 -10.21955 -9.72379 -8.71407 -8.67843 -6.36132 0.73836 1.15430 1.20086 1.30948 1.38163 1.52835 1.72533 2.13184 2.27374 2.33503 2.89112 3.03461 3.74346 4.05420 4.27827 4.56657 4.66316 4.74544 4.78712 5.05454 5.31475 5.57748 5.73640 5.99256 6.32894 6.54857 6.65610 6.75905 7.06119 7.66699 8.46021 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.058328 B = 0.008716 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.927041 B = 3211.534994 C = 3591.947562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.021 3.979 3 Si 0.963 3.037 4 H -0.220 1.220 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.358 4.358 8 H 0.059 0.941 9 N -0.379 5.379 10 C -0.047 4.047 11 C -0.022 4.022 12 N -0.449 5.449 13 C 0.285 3.715 14 C -0.287 4.287 15 C 0.107 3.893 16 N -0.463 5.463 17 H 0.456 0.544 18 N -0.356 5.356 19 C 0.576 3.424 20 O -0.627 6.627 21 H 0.292 0.708 22 H 0.192 0.808 23 H 0.243 0.757 24 H 0.189 0.811 25 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.773 3.836 -6.490 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.143 1.143 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.484 4.484 8 H 0.077 0.923 9 N -0.083 5.083 10 C -0.173 4.173 11 C -0.145 4.145 12 N -0.165 5.165 13 C 0.031 3.969 14 C -0.318 4.318 15 C -0.042 4.042 16 N -0.175 5.175 17 H 0.304 0.696 18 N -0.186 5.186 19 C 0.280 3.720 20 O -0.509 6.509 21 H 0.102 0.898 22 H 0.209 0.791 23 H 0.259 0.741 24 H 0.206 0.794 25 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 19.694 2.278 -5.405 20.549 hybrid contribution -0.326 0.268 0.249 0.490 sum 19.368 2.546 -5.156 20.204 Atomic orbital electron populations 1.69829 1.08060 1.30672 1.44133 1.26162 0.96261 1.02699 0.93305 0.85648 0.78974 0.75822 0.81265 1.14343 1.20622 1.17463 1.18737 0.82556 0.97229 1.49888 0.92254 1.41142 1.08463 1.18390 1.40316 1.22294 0.93124 0.98766 1.03120 1.22283 0.98141 0.87860 1.06180 1.41899 1.06507 1.20768 1.47296 1.19383 0.86501 0.91442 0.99560 1.21609 0.88058 1.06205 1.15890 1.23458 1.00878 0.86501 0.93327 1.46181 1.04744 1.19236 1.47303 0.69643 1.77751 0.98290 1.14649 1.27873 1.16593 0.81682 0.86950 0.86740 1.90812 1.80791 1.30590 1.48753 0.89800 0.79121 0.74087 0.79384 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.28 13.96 21.64 0.30 -51.98 15 2 C 0.02 1.16 5.45 84.88 0.46 1.63 15 3 Si 0.96 39.75 24.65 68.60 1.69 41.44 15 4 H -0.22 -7.39 6.70 99.48 0.67 -6.72 15 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 15 6 H -0.25 -10.25 6.63 99.48 0.66 -9.59 15 7 C -0.36 -22.34 10.34 83.97 0.87 -21.47 15 8 H 0.06 4.28 8.06 -2.91 -0.02 4.26 15 9 N -0.38 -21.01 2.74 -481.94 -1.32 -22.33 15 10 C -0.05 -1.96 8.45 82.52 0.70 -1.27 15 11 C -0.02 -0.76 11.10 82.47 0.92 0.16 15 12 N -0.45 -19.90 2.99 -482.15 -1.44 -21.35 15 13 C 0.29 10.85 7.78 133.27 1.04 11.89 15 14 C -0.29 -6.60 10.36 22.10 0.23 -6.37 15 15 C 0.11 1.68 11.98 83.52 1.00 2.68 15 16 N -0.46 -10.87 7.35 -57.62 -0.42 -11.30 15 17 H 0.46 7.08 8.96 -213.34 -1.91 5.16 15 18 N -0.36 -14.35 11.99 -54.35 -0.65 -15.00 15 19 C 0.58 33.09 8.42 179.07 1.51 34.60 15 20 O -0.63 -41.73 17.08 -4.38 -0.07 -41.80 15 21 H 0.29 15.24 8.31 -92.71 -0.77 14.47 15 22 H 0.19 6.82 4.39 -2.91 -0.01 6.81 15 23 H 0.24 4.68 8.00 -2.91 -0.02 4.66 15 24 H 0.19 2.78 8.00 -2.91 -0.02 2.76 15 25 H 0.25 0.50 8.06 -2.91 -0.02 0.47 15 Total: -1.00 -92.82 228.86 4.04 -88.78 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.76 Total: 11.69 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 6.72 Total: 21.85 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -3.54 Total: -121.95 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.07 Total: -41.80 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.69 Total: 41.44 kcal Total: -92.82 4.04 -88.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259652784.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.197 kcal (2) G-P(sol) polarization free energy of solvation -92.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds