Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47048 * 300.00818 * 3 2 1 6 6 H 1.48507 * 109.46940 * 60.00154 * 3 2 1 7 7 C 1.37873 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47183 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.23018 * 305.57702 * 10 9 7 12 12 C 1.53026 * 109.23088 * 186.30280 * 10 9 7 13 13 C 1.50732 * 109.37279 * 187.26860 * 12 10 9 14 14 O 1.32823 * 129.42106 * 200.54365 * 13 12 10 15 15 C 1.34646 * 110.98310 * 179.62200 * 14 13 12 16 16 C 1.34638 * 109.32156 * 0.06195 * 15 14 13 17 17 C 1.37545 * 122.82607 * 20.23513 * 13 12 10 18 18 C 1.46732 * 122.22637 * 0.47129 * 17 13 12 19 19 O 1.21321 * 122.45006 * 191.18749 * 18 17 13 20 20 C 1.52220 * 115.10856 * 11.16496 * 18 17 13 21 21 H 0.96993 * 119.99853 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.46759 * 60.00322 * 9 7 2 23 23 H 1.09004 * 109.46984 * 300.00481 * 9 7 2 24 24 H 1.08991 * 109.68060 * 67.16687 * 12 10 9 25 25 H 1.09002 * 109.25539 * 307.10750 * 12 10 9 26 26 H 1.07999 * 125.34327 * 180.10483 * 15 14 13 27 27 H 1.07998 * 127.26268 * 180.02562 * 16 15 14 28 28 H 1.09003 * 109.70495 * 77.49133 * 20 18 17 29 29 H 1.08999 * 109.70495 * 198.06084 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9339 -3.5458 -0.8377 12 6 1.4814 -4.9784 -0.1592 13 6 2.4332 -6.1335 0.0188 14 8 2.3131 -7.3946 -0.3804 15 6 3.3943 -8.1164 -0.0297 16 6 4.2658 -7.3248 0.6234 17 6 3.6421 -6.0110 0.6634 18 6 4.0963 -4.7404 1.2398 19 8 5.2324 -4.5722 1.6309 20 6 3.0382 -3.6484 1.3106 21 1 -0.4849 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 1.0336 -5.0256 -1.1517 25 1 0.6980 -5.0327 0.5968 26 1 3.5401 -9.1657 -0.2400 27 1 5.2255 -7.6057 1.0314 28 1 2.3672 -3.8406 2.1479 29 1 3.5189 -2.6787 1.4402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259672912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = -42.696401 kcal Electronic energy + Delta-G solvation = -14438.149235 eV Core-core repulsion = 11906.255826 eV Total energy + Delta-G solvation = -2531.893410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.53172 -38.77100 -36.23800 -33.01222 -32.35767 -30.10118 -28.36593 -26.72392 -23.33682 -22.75169 -20.93768 -20.09585 -18.34168 -17.11341 -16.48864 -16.11035 -15.25988 -14.52942 -14.38193 -14.15725 -13.94941 -13.58350 -12.87555 -12.55334 -12.19824 -11.92621 -11.61851 -11.21945 -10.90879 -10.63980 -10.54001 -10.02858 -9.73791 -9.69840 -9.15439 -9.08687 -8.43228 -8.35911 -6.07993 -4.10393 1.36913 2.04810 2.82841 3.28310 3.28899 3.37206 3.42064 4.41191 4.43693 4.79910 4.94566 5.15955 5.28466 5.38799 5.53414 5.65580 5.71337 5.82523 6.02175 6.12687 6.17920 6.41318 6.63229 6.75274 6.83215 7.11542 7.51969 7.60757 7.89811 7.96621 8.29812 8.95322 9.54775 11.03128 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046832 B = 0.007162 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.743883 B = 3908.511508 C = 4385.878282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.071 4.071 11 H 0.069 0.931 12 C -0.045 4.045 13 C 0.075 3.925 14 O -0.170 6.170 15 C -0.063 4.063 16 C -0.160 4.160 17 C -0.286 4.286 18 C 0.425 3.575 19 O -0.470 6.470 20 C -0.148 4.148 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.205 0.795 27 H 0.155 0.845 28 H 0.095 0.905 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -13.086 0.103 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.090 4.090 11 H 0.088 0.912 12 C -0.081 4.081 13 C 0.021 3.979 14 O -0.066 6.066 15 C -0.128 4.128 16 C -0.179 4.179 17 C -0.288 4.288 18 C 0.304 3.696 19 O -0.346 6.346 20 C -0.186 4.186 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.221 0.779 27 H 0.173 0.827 28 H 0.113 0.887 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.091 -12.995 0.150 13.359 hybrid contribution 0.601 0.715 0.040 0.935 sum 3.692 -12.281 0.190 12.825 Atomic orbital electron populations 1.69959 1.06033 1.26678 1.50608 1.24987 0.94822 0.99276 0.95127 0.86559 0.80278 0.83758 0.77609 1.19603 1.21021 1.20980 1.21230 0.93160 0.90655 1.50922 0.92274 1.19159 0.93287 0.90331 0.98040 1.21282 0.98292 0.93332 0.96116 0.91239 1.20677 0.95683 0.87461 1.04319 1.23784 0.96168 0.83683 0.94277 1.83544 1.40556 1.19823 1.62644 1.24005 0.86381 0.97704 1.04702 1.22480 1.00911 0.91919 1.02600 1.22080 0.97758 0.97124 1.11870 1.22389 0.88261 0.86728 0.72222 1.90477 1.21495 1.83134 1.39521 1.22442 0.97284 0.98920 0.99942 0.92955 0.95716 0.95798 0.88942 0.88345 0.77861 0.82741 0.88662 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.79 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.52 -13.71 8.34 -34.44 -0.29 -14.00 15 8 H 0.06 1.54 7.07 -52.48 -0.37 1.17 15 9 C 0.03 0.66 4.42 -27.88 -0.12 0.54 15 10 C -0.07 -1.33 2.05 -90.49 -0.19 -1.51 15 11 H 0.07 1.34 8.14 -51.92 -0.42 0.92 15 12 C -0.04 -0.68 5.51 -27.85 -0.15 -0.83 15 13 C 0.07 1.15 7.39 -34.55 -0.26 0.89 15 14 O -0.17 -2.39 10.50 8.49 0.09 -2.30 15 15 C -0.06 -0.74 12.04 29.46 0.35 -0.38 15 16 C -0.16 -2.24 11.17 -37.97 -0.42 -2.66 15 17 C -0.29 -4.77 6.28 -103.84 -0.65 -5.42 15 18 C 0.42 7.90 7.09 -30.12 -0.21 7.69 15 19 O -0.47 -9.90 17.99 5.52 0.10 -9.80 15 20 C -0.15 -2.72 5.31 -27.01 -0.14 -2.86 15 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.10 1.38 8.13 -51.93 -0.42 0.95 15 26 H 0.20 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.15 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.10 1.60 8.14 -51.93 -0.42 1.18 15 29 H 0.11 2.17 6.84 -51.93 -0.36 1.82 15 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -30.43 254.87 -5.68 -36.11 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.24 Total: -2.07 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.18 Total: -17.02 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.74 Total: -24.79 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.19 Total: -12.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.43 -5.68 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259672912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds