Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35030 * 125.62218 * 2 1 4 4 C 1.40538 * 107.10693 * 179.74570 * 3 2 1 5 5 C 1.36600 * 106.70745 * 0.37888 * 4 3 2 6 6 C 1.46790 * 125.97715 * 179.88773 * 5 4 3 7 7 N 1.32192 * 126.67300 * 14.73598 * 6 5 4 8 8 N 1.28359 * 110.48033 * 179.97438 * 7 6 5 9 9 N 1.28834 * 110.83326 * 0.02562 * 8 7 6 10 10 N 1.37292 * 126.66788 * 194.71226 * 6 5 4 11 11 C 1.37124 * 127.50847 * 0.02562 * 10 6 5 12 12 H 1.08000 * 119.99878 * 0.03448 * 11 10 6 13 13 C 1.39045 * 120.00228 * 180.02562 * 11 10 6 14 14 N 1.31248 * 119.99583 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00000 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47395 * 59.99940 * 15 13 11 17 17 H 1.48496 * 109.46906 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47084 * 299.99806 * 15 13 11 19 19 O 1.34195 * 125.61850 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46745 * 299.99844 * 1 2 3 22 22 H 1.09000 * 109.47035 * 59.99475 * 1 2 3 23 23 H 1.08009 * 126.44762 * 0.02562 * 3 2 1 24 24 H 1.07999 * 126.64812 * 180.27737 * 4 3 2 25 25 H 0.96998 * 119.99605 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2935 1.0976 0.0000 4 6 3.6262 0.6513 0.0060 5 6 3.5831 -0.7140 0.0007 6 6 4.7432 -1.6133 0.0017 7 7 5.9944 -1.2877 0.2773 8 7 6.7568 -2.3163 0.1857 9 7 6.0795 -3.3604 -0.1475 10 7 4.7397 -2.9564 -0.2831 11 6 3.6637 -3.7344 -0.6255 12 1 2.6798 -3.2946 -0.6957 13 6 3.8393 -5.0895 -0.8826 14 7 5.0350 -5.6241 -0.7970 15 14 2.3737 -6.1492 -1.3499 16 1 1.7604 -5.6241 -2.5963 17 1 2.8239 -7.5469 -1.5710 18 1 1.3716 -6.1189 -0.2543 19 8 2.2886 -1.0909 0.0005 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.9610 2.1253 0.0004 24 1 4.5126 1.2683 0.0118 25 1 5.1576 -6.5693 -0.9767 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694528.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = 114.943483 kcal Electronic energy + Delta-G solvation = -14343.194813 eV Core-core repulsion = 11746.889589 eV Total energy + Delta-G solvation = -2596.305224 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03350 -40.83555 -34.81396 -32.77703 -32.41225 -31.63280 -29.99071 -26.79410 -25.73102 -22.28790 -21.93560 -20.59696 -19.68800 -18.38927 -16.58735 -15.84694 -15.57822 -14.60305 -14.56235 -14.29350 -13.00090 -12.85026 -12.74684 -12.40987 -12.35132 -12.10432 -11.68522 -11.61376 -11.16099 -10.74216 -10.55703 -10.34691 -9.58593 -9.22789 -9.20160 -8.89962 -7.47891 -7.18906 -4.94818 1.74614 2.63178 2.78574 2.86432 2.90617 3.14566 3.31115 3.45789 4.00090 4.12373 4.52479 5.05487 5.31802 5.43883 5.56164 5.62748 5.81686 6.03937 6.23317 6.42575 6.47480 6.62741 6.83300 7.03056 7.33513 7.59196 7.65837 8.09141 8.61888 9.76899 10.31831 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.012214 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.268893 B = 2291.953499 C = 3412.811137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.189 4.189 5 C 0.110 3.890 6 C 0.102 3.898 7 N -0.318 5.318 8 N -0.134 5.134 9 N -0.120 5.120 10 N -0.142 5.142 11 C -0.268 4.268 12 H 0.136 0.864 13 C 0.040 3.960 14 N -0.734 5.734 15 Si 0.951 3.049 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.258 1.258 19 O -0.165 6.165 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.145 0.855 24 H 0.152 0.848 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 4.469 -0.826 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 C -0.224 4.224 4 C -0.211 4.211 5 C 0.056 3.944 6 C -0.156 4.156 7 N -0.185 5.185 8 N -0.124 5.124 9 N -0.104 5.104 10 N 0.079 4.921 11 C -0.412 4.412 12 H 0.153 0.847 13 C -0.183 4.183 14 N -0.360 5.360 15 Si 0.772 3.228 16 H -0.182 1.182 17 H -0.193 1.193 18 H -0.182 1.182 19 O -0.061 6.061 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.163 0.837 24 H 0.170 0.830 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.746 3.750 -0.633 10.461 hybrid contribution -1.442 -0.445 -0.375 1.555 sum -11.187 3.305 -1.008 11.709 Atomic orbital electron populations 1.20218 0.85487 1.03739 1.02940 1.22396 0.93733 0.84231 1.08269 1.21344 0.92623 0.98896 1.09490 1.21563 0.97923 0.92479 1.09145 1.18374 0.79354 0.91023 1.05618 1.21147 0.92405 0.83457 1.18608 1.74243 0.97554 1.22954 1.23784 1.77483 1.24211 0.94129 1.16577 1.83012 0.83220 1.15648 1.28515 1.47968 1.08458 1.04880 1.30807 1.20599 0.87188 0.90859 1.42530 0.84676 1.26022 0.99409 0.97536 0.95309 1.70114 1.21932 1.14701 1.29216 0.85599 0.78908 0.78084 0.80240 1.18235 1.19287 1.18200 1.84044 1.15816 1.34605 1.71605 0.90766 0.90127 0.90120 0.83675 0.83036 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.41 36.01 0.37 -0.36 15 2 C -0.04 -0.57 7.32 -35.44 -0.26 -0.83 15 3 C -0.20 -3.25 10.77 -39.86 -0.43 -3.68 15 4 C -0.19 -3.65 10.85 -39.31 -0.43 -4.07 15 5 C 0.11 2.49 7.05 -36.72 -0.26 2.23 15 6 C 0.10 2.71 7.97 -153.72 -1.22 1.49 15 7 N -0.32 -8.78 12.21 32.44 0.40 -8.38 15 8 N -0.13 -3.90 13.34 60.35 0.81 -3.09 15 9 N -0.12 -3.57 11.87 60.35 0.72 -2.86 15 10 N -0.14 -4.00 3.81 -9.47 -0.04 -4.04 15 11 C -0.27 -6.88 10.05 -14.89 -0.15 -7.03 15 12 H 0.14 3.17 6.37 -52.49 -0.33 2.84 15 13 C 0.04 0.96 5.50 -17.50 -0.10 0.87 15 14 N -0.73 -18.81 11.93 55.50 0.66 -18.15 15 15 Si 0.95 17.13 29.55 -169.99 -5.02 12.10 15 16 H -0.26 -4.51 7.11 56.52 0.40 -4.11 15 17 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 18 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 19 O -0.17 -3.42 9.11 4.55 0.04 -3.37 15 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.15 1.79 8.06 -52.48 -0.42 1.37 15 24 H 0.15 2.76 8.06 -52.49 -0.42 2.33 15 25 H 0.29 6.64 8.31 -40.82 -0.34 6.30 15 LS Contribution 238.29 15.07 3.59 3.59 Total: -1.00 -31.38 238.29 -2.90 -34.28 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -1.58 Total: 1.30 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.47 Total: -11.38 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 2.54 Total: -36.52 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.02 Total: 12.10 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.38 -2.90 -34.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694528.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.227 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds