Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47182 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47124 * 30.00031 * 3 2 1 6 6 H 1.48503 * 109.47294 * 149.99597 * 3 2 1 7 7 C 1.37874 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 185.11489 * 7 2 1 9 9 C 1.50701 * 119.99818 * 5.13053 * 7 2 1 10 10 H 1.08993 * 109.39779 * 24.98223 * 9 7 2 11 11 C 1.53076 * 109.41148 * 265.08955 * 9 7 2 12 12 C 1.53415 * 108.30547 * 191.71411 * 11 9 7 13 13 O 1.42827 * 108.36530 * 64.63475 * 12 11 9 14 14 C 1.35938 * 117.84355 * 310.77180 * 13 12 11 15 15 C 1.39578 * 118.49003 * 197.21390 * 14 13 12 16 16 O 1.35993 * 119.94013 * 0.44656 * 15 14 13 17 17 C 1.38375 * 120.12460 * 180.46626 * 15 14 13 18 18 C 1.38286 * 119.89183 * 359.97438 * 17 15 14 19 19 C 1.38066 * 120.02450 * 359.90780 * 18 17 15 20 20 C 1.38189 * 121.83002 * 17.48867 * 14 13 12 21 21 H 0.97008 * 119.99754 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.69000 * 72.01805 * 11 9 7 23 23 H 1.09000 * 109.73969 * 311.43709 * 11 9 7 24 24 H 1.09001 * 109.68588 * 304.91370 * 12 11 9 25 25 H 1.09000 * 109.71646 * 184.37520 * 12 11 9 26 26 H 0.96700 * 113.99798 * 89.99576 * 16 15 14 27 27 H 1.07999 * 120.05790 * 179.97438 * 17 15 14 28 28 H 1.08000 * 119.99213 * 179.87573 * 18 17 15 29 29 H 1.08000 * 119.79332 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0839 9 6 1.2555 -2.4966 -0.1156 10 1 0.3038 -2.3233 -0.6178 11 6 0.9980 -3.0619 1.2835 12 6 0.5066 -4.5077 1.1360 13 8 1.5607 -5.2855 0.5672 14 6 2.1768 -4.8033 -0.5445 15 6 2.9353 -5.6822 -1.3195 16 8 3.0366 -6.9898 -0.9599 17 6 3.5848 -5.2253 -2.4527 18 6 3.4811 -3.8955 -2.8176 19 6 2.7290 -3.0260 -2.0530 20 6 2.0746 -3.4765 -0.9169 21 1 -0.4850 0.8401 0.0004 22 1 0.2375 -2.4648 1.7866 23 1 1.9211 -3.0450 1.8629 24 1 -0.3642 -4.5345 0.4810 25 1 0.2420 -4.9077 2.1148 26 1 2.3519 -7.5566 -1.3408 27 1 4.1717 -5.9062 -3.0514 28 1 3.9889 -3.5368 -3.7006 29 1 2.6509 -1.9881 -2.3411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = -68.214682 kcal Electronic energy + Delta-G solvation = -14877.689678 eV Core-core repulsion = 12344.689713 eV Total energy + Delta-G solvation = -2532.999965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.03792 -37.45604 -36.07962 -34.00062 -31.49838 -29.91949 -28.53097 -26.31396 -23.37689 -22.78277 -21.43427 -19.14979 -17.67418 -16.94637 -16.49574 -15.74355 -14.98639 -14.54886 -14.47260 -13.77446 -13.54270 -12.84573 -12.74088 -12.28781 -12.02448 -11.18098 -11.05004 -11.03711 -10.77671 -10.69899 -10.33261 -10.27689 -9.84846 -9.26433 -9.15013 -8.56553 -7.84195 -7.40673 -6.16558 -4.20387 1.91257 2.05014 3.23305 3.30899 3.34821 3.96523 4.27116 4.36917 4.73714 5.12871 5.49737 5.70488 5.75975 5.80525 5.95624 6.01122 6.09330 6.23144 6.48628 6.72464 6.80231 6.88579 7.10560 7.16555 7.42933 7.50262 7.64641 7.77476 7.87703 8.21798 8.31971 8.87591 9.44023 10.92136 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035752 B = 0.009965 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.981652 B = 2809.033193 C = 3400.934284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.070 3.930 10 H 0.072 0.928 11 C -0.142 4.142 12 C 0.054 3.946 13 O -0.317 6.317 14 C 0.093 3.907 15 C 0.056 3.944 16 O -0.492 6.492 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.104 4.104 21 H 0.264 0.736 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.375 0.625 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -7.586 -3.012 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.052 3.948 10 H 0.090 0.910 11 C -0.180 4.180 12 C -0.021 4.021 13 O -0.232 6.232 14 C 0.047 3.953 15 C 0.011 3.989 16 O -0.300 6.300 17 C -0.155 4.155 18 C -0.169 4.169 19 C -0.093 4.093 20 C -0.105 4.105 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.229 0.771 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.968 -7.429 -2.572 8.105 hybrid contribution -0.082 0.977 -0.225 1.006 sum 1.885 -6.452 -2.798 7.281 Atomic orbital electron populations 1.69921 1.06008 1.27018 1.49916 1.24997 0.94879 0.99319 0.94500 0.86555 0.79948 0.83056 0.78312 1.20430 1.21184 1.19729 1.20964 0.93313 0.89398 1.50834 0.92290 1.17942 0.96077 0.91030 0.89793 0.90980 1.22372 1.01278 0.92775 1.01582 1.23122 0.87967 0.93572 0.97448 1.85947 1.49030 1.48574 1.39634 1.19249 0.95377 0.92269 0.88402 1.17866 1.02655 0.83506 0.94872 1.84871 1.54720 1.16147 1.74227 1.20938 1.01784 0.96696 0.96038 1.20891 1.01949 0.93148 1.00932 1.21160 0.94689 1.00116 0.93363 1.20769 1.00298 0.92027 0.97433 0.92668 0.90579 0.92268 0.92776 0.89085 0.77141 0.86080 0.86449 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 12.84 55.43 0.71 -23.84 15 2 C 0.07 1.74 5.45 -17.82 -0.10 1.64 15 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.51 -13.35 7.00 -34.44 -0.24 -13.60 15 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 15 9 C 0.07 1.70 2.38 -92.85 -0.22 1.48 15 10 H 0.07 1.92 7.37 -51.93 -0.38 1.53 15 11 C -0.14 -3.13 5.49 -26.48 -0.15 -3.28 15 12 C 0.05 1.02 7.03 37.37 0.26 1.28 15 13 O -0.32 -6.59 10.00 -35.62 -0.36 -6.95 15 14 C 0.09 1.96 6.48 -39.10 -0.25 1.71 15 15 C 0.06 1.06 6.72 -39.03 -0.26 0.80 15 16 O -0.49 -8.33 13.21 -35.79 -0.47 -8.80 15 17 C -0.14 -2.32 9.98 -39.51 -0.39 -2.71 15 18 C -0.15 -2.63 10.04 -39.63 -0.40 -3.03 15 19 C -0.08 -1.55 9.10 -39.50 -0.36 -1.91 15 20 C -0.10 -2.33 5.42 -104.46 -0.57 -2.90 15 21 H 0.26 6.92 8.31 -40.82 -0.34 6.59 15 22 H 0.08 1.71 8.14 -51.93 -0.42 1.29 15 23 H 0.06 1.35 8.10 -51.93 -0.42 0.93 15 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.38 4.46 9.06 45.56 0.41 4.87 15 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 29 H 0.13 2.81 7.35 -52.49 -0.39 2.42 15 LS Contribution 250.56 15.07 3.78 3.78 Total: -1.00 -29.31 250.56 -6.47 -35.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -2.44 Total: 5.00 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.68 Total: -20.52 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.71 Total: -23.84 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.83 Total: -15.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.31 -6.47 -35.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.433 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds