Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47182 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47124 * 30.00031 * 3 2 1 6 6 H 1.48503 * 109.47294 * 149.99597 * 3 2 1 7 7 C 1.37874 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 185.11489 * 7 2 1 9 9 C 1.50701 * 119.99818 * 5.13053 * 7 2 1 10 10 H 1.08993 * 109.39779 * 24.98223 * 9 7 2 11 11 C 1.53076 * 109.41148 * 265.08955 * 9 7 2 12 12 C 1.53415 * 108.30547 * 191.71411 * 11 9 7 13 13 O 1.42827 * 108.36530 * 64.63475 * 12 11 9 14 14 C 1.35938 * 117.84355 * 310.77180 * 13 12 11 15 15 C 1.39578 * 118.49003 * 197.21390 * 14 13 12 16 16 O 1.35993 * 119.94013 * 0.44656 * 15 14 13 17 17 C 1.38375 * 120.12460 * 180.46626 * 15 14 13 18 18 C 1.38286 * 119.89183 * 359.97438 * 17 15 14 19 19 C 1.38066 * 120.02450 * 359.90780 * 18 17 15 20 20 C 1.38189 * 121.83002 * 17.48867 * 14 13 12 21 21 H 0.97008 * 119.99754 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.69000 * 72.01805 * 11 9 7 23 23 H 1.09000 * 109.73969 * 311.43709 * 11 9 7 24 24 H 1.09001 * 109.68588 * 304.91370 * 12 11 9 25 25 H 1.09000 * 109.71646 * 184.37520 * 12 11 9 26 26 H 0.96700 * 113.99798 * 89.99576 * 16 15 14 27 27 H 1.07999 * 120.05790 * 179.97438 * 17 15 14 28 28 H 1.08000 * 119.99213 * 179.87573 * 18 17 15 29 29 H 1.08000 * 119.79332 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0839 9 6 1.2555 -2.4966 -0.1156 10 1 0.3038 -2.3233 -0.6178 11 6 0.9980 -3.0619 1.2835 12 6 0.5066 -4.5077 1.1360 13 8 1.5607 -5.2855 0.5672 14 6 2.1768 -4.8033 -0.5445 15 6 2.9353 -5.6822 -1.3195 16 8 3.0366 -6.9898 -0.9599 17 6 3.5848 -5.2253 -2.4527 18 6 3.4811 -3.8955 -2.8176 19 6 2.7290 -3.0260 -2.0530 20 6 2.0746 -3.4765 -0.9169 21 1 -0.4850 0.8401 0.0004 22 1 0.2375 -2.4648 1.7866 23 1 1.9211 -3.0450 1.8629 24 1 -0.3642 -4.5345 0.4810 25 1 0.2420 -4.9077 2.1148 26 1 2.3519 -7.5566 -1.3408 27 1 4.1717 -5.9062 -3.0514 28 1 3.9889 -3.5368 -3.7006 29 1 2.6509 -1.9881 -2.3411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = -87.139375 kcal Electronic energy + Delta-G solvation = -14878.510314 eV Core-core repulsion = 12344.689713 eV Total energy + Delta-G solvation = -2533.820602 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58205 -38.91123 -37.56984 -35.79924 -33.39779 -31.45363 -30.02789 -28.18097 -25.10666 -24.40726 -22.99050 -20.78517 -19.15572 -18.55559 -18.37487 -17.29648 -16.67351 -16.20117 -16.04498 -15.23716 -15.03559 -14.65568 -14.52926 -13.88274 -13.56236 -12.93069 -12.85412 -12.65876 -12.55032 -12.26698 -12.09366 -11.86354 -11.52269 -11.16270 -10.88595 -10.54492 -9.40023 -8.94507 -8.19154 -6.29292 0.42461 0.54933 1.39707 1.41356 1.51353 2.38741 2.46615 2.83497 3.09107 3.37874 4.11125 4.13016 4.16983 4.27446 4.45837 4.52078 4.60585 4.64845 4.96570 5.01247 5.17029 5.35262 5.45628 5.52210 5.58650 5.72899 5.92926 5.98521 6.26692 6.43899 6.81665 6.99164 7.37387 8.88953 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035752 B = 0.009965 C = 0.008231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.981652 B = 2809.033193 C = 3400.934284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.020 3.980 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.047 0.953 9 C 0.069 3.931 10 H 0.038 0.962 11 C -0.137 4.137 12 C 0.061 3.939 13 O -0.324 6.324 14 C 0.070 3.930 15 C 0.059 3.941 16 O -0.496 6.496 17 C -0.123 4.123 18 C -0.137 4.137 19 C -0.096 4.096 20 C -0.133 4.133 21 H 0.265 0.735 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.126 0.874 26 H 0.400 0.600 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -8.839 -3.913 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.180 4.180 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.066 0.934 9 C 0.050 3.950 10 H 0.056 0.944 11 C -0.175 4.175 12 C -0.014 4.014 13 O -0.238 6.238 14 C 0.024 3.976 15 C 0.014 3.986 16 O -0.308 6.308 17 C -0.141 4.141 18 C -0.155 4.155 19 C -0.114 4.114 20 C -0.134 4.134 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.144 0.856 26 H 0.257 0.743 27 H 0.179 0.821 28 H 0.172 0.828 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.258 -8.704 -3.483 9.925 hybrid contribution -0.454 1.258 0.008 1.337 sum 2.804 -7.446 -3.475 8.683 Atomic orbital electron populations 1.70028 1.07255 1.27719 1.51039 1.25700 0.95612 1.02345 0.94304 0.85604 0.78625 0.79229 0.78552 1.19602 1.20826 1.19586 1.21150 0.92862 0.90871 1.50561 0.93429 1.17784 0.94767 0.91415 0.90999 0.94391 1.22195 1.00333 0.95053 0.99923 1.23160 0.87588 0.91327 0.99285 1.85927 1.49438 1.48651 1.39814 1.19501 0.96643 0.92294 0.89141 1.18047 1.01690 0.84146 0.94712 1.84803 1.55846 1.15349 1.74759 1.21354 1.00579 0.96912 0.95252 1.21224 1.00295 0.92891 1.01089 1.21169 0.96180 1.00163 0.93890 1.20627 1.01773 0.92542 0.98504 0.92622 0.91904 0.93504 0.92308 0.85587 0.74306 0.82104 0.82842 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 12.84 21.45 0.28 -52.08 15 2 C 0.02 1.07 5.45 84.65 0.46 1.53 15 3 Si 0.95 42.86 29.54 68.60 2.03 44.88 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.52 -28.16 7.00 25.60 0.18 -27.98 15 8 H 0.05 2.64 7.82 -2.91 -0.02 2.61 15 9 C 0.07 3.48 2.38 -12.24 -0.03 3.45 15 10 H 0.04 2.14 7.37 -2.39 -0.02 2.13 15 11 C -0.14 -6.23 5.49 30.76 0.17 -6.06 15 12 C 0.06 2.28 7.03 72.12 0.51 2.79 15 13 O -0.32 -13.14 10.00 -77.48 -0.78 -13.91 15 14 C 0.07 2.90 6.48 22.58 0.15 3.04 15 15 C 0.06 2.09 6.72 22.63 0.15 2.24 15 16 O -0.50 -15.12 13.21 -78.10 -1.03 -16.16 15 17 C -0.12 -3.70 9.98 22.31 0.22 -3.48 15 18 C -0.14 -4.40 10.04 22.24 0.22 -4.18 15 19 C -0.10 -3.94 9.10 22.32 0.20 -3.74 15 20 C -0.13 -6.06 5.42 -19.76 -0.11 -6.16 15 21 H 0.26 14.25 8.31 -92.70 -0.77 13.48 15 22 H 0.06 2.95 8.14 -2.39 -0.02 2.93 15 23 H 0.05 2.19 8.10 -2.39 -0.02 2.17 15 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.13 3.78 8.14 -2.39 -0.02 3.76 15 26 H 0.40 8.04 9.06 -74.06 -0.67 7.36 15 27 H 0.16 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 29 H 0.12 5.07 7.35 -2.91 -0.02 5.05 15 Total: -1.00 -64.04 250.56 3.11 -60.93 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.49 Total: 14.89 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.13 Total: -38.55 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.28 Total: -52.08 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.81 Total: -30.07 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.04 3.11 -60.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.213 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds