Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00031 * 2 1 4 4 H 1.48498 * 109.46973 * 269.99778 * 3 2 1 5 5 H 1.48497 * 109.47236 * 30.00282 * 3 2 1 6 6 H 1.48503 * 109.47036 * 149.99765 * 3 2 1 7 7 C 1.37875 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.73178 * 299.40895 * 9 7 2 11 11 C 1.53411 * 109.70418 * 59.99811 * 9 7 2 12 12 O 1.42823 * 108.41493 * 184.45829 * 11 9 7 13 13 C 1.35946 * 117.87256 * 310.89077 * 12 11 9 14 14 C 1.39134 * 118.43216 * 196.99339 * 13 12 11 15 15 C 1.37943 * 120.29429 * 180.19718 * 14 13 12 16 16 C 1.38726 * 119.89995 * 0.02562 * 15 14 13 17 17 O 1.35982 * 120.06440 * 179.97438 * 16 15 14 18 18 C 1.38528 * 119.86170 * 359.91688 * 16 15 14 19 19 C 1.38346 * 121.78857 * 17.05254 * 13 12 11 20 20 C 1.50783 * 121.41130 * 359.64355 * 19 13 12 21 21 H 0.96994 * 119.99785 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.68418 * 64.71468 * 11 9 7 23 23 H 1.08999 * 109.67910 * 304.19893 * 11 9 7 24 24 H 1.08001 * 119.85377 * 0.17328 * 14 13 12 25 25 H 1.07998 * 120.04906 * 180.02562 * 15 14 13 26 26 H 0.96706 * 113.99795 * 269.97808 * 17 16 15 27 27 H 1.07997 * 119.85911 * 179.97438 * 18 16 15 28 28 H 1.09003 * 109.43748 * 137.86908 * 20 19 13 29 29 H 1.09004 * 109.43595 * 257.78194 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6304 -2.5657 0.8941 11 6 0.3675 -2.5862 -1.2505 12 8 -0.4103 -3.7815 -1.1713 13 6 0.2350 -4.9413 -0.8772 14 6 -0.4110 -6.1446 -1.1429 15 6 0.2066 -7.3442 -0.8559 16 6 1.4773 -7.3520 -0.2993 17 8 2.0890 -8.5326 -0.0146 18 6 2.1220 -6.1547 -0.0354 19 6 1.5036 -4.9498 -0.3253 20 6 2.2400 -3.6679 -0.0285 21 1 -0.4849 0.8400 -0.0004 22 1 0.9946 -2.6147 -2.1417 23 1 -0.2933 -1.7205 -1.2942 24 1 -1.4006 -6.1394 -1.5755 25 1 -0.2984 -8.2758 -1.0642 26 1 1.9119 -8.8623 0.8771 27 1 3.1111 -6.1608 0.3983 28 1 2.7339 -3.7492 0.9398 29 1 2.9867 -3.4910 -0.8027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259722748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -89.057715 kcal Electronic energy + Delta-G solvation = -14571.528019 eV Core-core repulsion = 12037.624232 eV Total energy + Delta-G solvation = -2533.903787 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52002 -39.43517 -36.78256 -36.13797 -33.96074 -31.31571 -30.15345 -27.18126 -26.32460 -23.78867 -23.42868 -20.93197 -18.85480 -18.62142 -18.43987 -17.51242 -16.41809 -16.36720 -15.63337 -15.32560 -15.00984 -14.69570 -14.22114 -14.16750 -14.00741 -13.40215 -12.87482 -12.84549 -12.49966 -12.38590 -11.98801 -11.62309 -11.54172 -11.16269 -10.84417 -10.56160 -9.76514 -8.87034 -8.21226 -6.36420 0.33004 0.37668 1.42366 1.43303 1.53916 2.37677 2.57994 2.72802 3.09167 3.37147 3.88487 3.91849 4.25975 4.28760 4.40764 4.53847 4.66723 4.73451 4.87560 4.99425 5.09028 5.20726 5.41347 5.45821 5.58189 5.59947 5.75463 5.79214 6.15444 6.63803 6.75207 6.95320 7.33732 8.85635 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.059089 B = 0.007191 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.745332 B = 3892.732528 C = 4284.528754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.015 3.985 10 H 0.003 0.997 11 C 0.072 3.928 12 O -0.342 6.342 13 C 0.099 3.901 14 C -0.145 4.145 15 C -0.110 4.110 16 C 0.066 3.934 17 O -0.502 6.502 18 C -0.117 4.117 19 C -0.154 4.154 20 C -0.066 4.066 21 H 0.267 0.733 22 H 0.038 0.962 23 H 0.110 0.890 24 H 0.145 0.855 25 H 0.162 0.838 26 H 0.406 0.594 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -11.914 -0.179 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.003 4.003 10 H 0.021 0.979 11 C -0.003 4.003 12 O -0.257 6.257 13 C 0.054 3.946 14 C -0.164 4.164 15 C -0.128 4.128 16 C 0.022 3.978 17 O -0.314 6.314 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.102 4.102 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.128 0.872 24 H 0.162 0.838 25 H 0.180 0.820 26 H 0.265 0.735 27 H 0.158 0.842 28 H 0.093 0.907 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.684 -11.708 -0.775 11.854 hybrid contribution 0.230 1.247 0.585 1.396 sum 1.913 -10.461 -0.190 10.637 Atomic orbital electron populations 1.69953 1.07390 1.27947 1.50538 1.25860 0.95742 1.02903 0.94042 0.85439 0.78612 0.78515 0.78443 1.19804 1.20891 1.19037 1.21381 0.93457 0.90787 1.51710 0.91691 1.19216 0.93816 0.93908 0.93382 0.97908 1.23239 0.95604 0.83243 0.98197 1.85925 1.38787 1.15583 1.85384 1.19335 0.92136 0.87078 0.96096 1.20703 1.01969 0.89144 1.04581 1.21367 0.93941 0.98142 0.99360 1.18247 0.92026 0.85101 1.02455 1.84799 1.72741 1.34937 1.38968 1.21310 1.00851 0.90552 1.00828 1.20115 0.95393 0.96702 1.03248 1.20548 0.97615 0.90546 1.01538 0.92391 0.94339 0.87197 0.83757 0.82025 0.73545 0.84188 0.90657 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 11.32 21.45 0.24 -51.80 15 2 C 0.01 0.74 5.30 84.65 0.45 1.19 15 3 Si 0.97 42.18 29.54 68.60 2.03 44.21 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 7 C -0.54 -28.82 8.55 25.60 0.22 -28.60 15 8 H 0.06 3.37 7.75 -2.91 -0.02 3.35 15 9 C 0.02 0.79 2.33 -11.36 -0.03 0.76 15 10 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 11 C 0.07 3.60 6.14 72.12 0.44 4.04 15 12 O -0.34 -16.09 10.27 -92.95 -0.95 -17.04 15 13 C 0.10 4.03 6.47 22.51 0.15 4.18 15 14 C -0.15 -4.72 9.93 22.42 0.22 -4.50 15 15 C -0.11 -2.95 9.98 22.32 0.22 -2.72 15 16 C 0.07 1.85 6.70 22.46 0.15 2.00 15 17 O -0.50 -11.23 13.51 -93.35 -1.26 -12.49 15 18 C -0.12 -3.74 9.60 22.40 0.22 -3.53 15 19 C -0.15 -6.00 5.75 -19.75 -0.11 -6.12 15 20 C -0.07 -2.79 5.14 29.92 0.15 -2.63 15 21 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 22 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.11 6.06 6.02 -2.39 -0.01 6.05 15 24 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 25 H 0.16 3.18 8.06 -2.91 -0.02 3.15 15 26 H 0.41 4.88 9.06 -74.05 -0.67 4.21 15 27 H 0.14 3.94 8.06 -2.91 -0.02 3.91 15 28 H 0.07 3.00 8.14 -2.39 -0.02 2.98 15 29 H 0.07 2.90 8.09 -2.39 -0.02 2.88 15 Total: -1.00 -62.48 249.69 2.63 -59.85 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.49 Total: 13.21 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 2.08 Total: -35.94 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.24 Total: -51.80 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -2.22 Total: -29.53 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -62.48 2.63 -59.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.205 kcal (2) G-P(sol) polarization free energy of solvation -62.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds