Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99614 * 2 1 4 4 H 1.48496 * 109.47415 * 270.00133 * 3 2 1 5 5 H 1.48502 * 109.47226 * 30.00415 * 3 2 1 6 6 H 1.48499 * 109.47263 * 150.00164 * 3 2 1 7 7 C 1.37872 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.70052 * 59.43134 * 9 7 2 11 11 C 1.53434 * 109.72699 * 298.81925 * 9 7 2 12 12 O 1.42821 * 108.37516 * 175.52758 * 11 9 7 13 13 C 1.35955 * 117.86934 * 49.09840 * 12 11 9 14 14 C 1.39124 * 118.43074 * 163.00146 * 13 12 11 15 15 C 1.37953 * 120.29340 * 179.82294 * 14 13 12 16 16 C 1.38716 * 119.89741 * 0.02562 * 15 14 13 17 17 O 1.35987 * 120.06436 * 180.02562 * 16 15 14 18 18 C 1.38526 * 119.86462 * 0.08345 * 16 15 14 19 19 C 1.38346 * 121.78864 * 342.97879 * 13 12 11 20 20 C 1.50789 * 121.41028 * 0.31840 * 19 13 12 21 21 H 0.96996 * 120.00396 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.68495 * 55.80464 * 11 9 7 23 23 H 1.09001 * 109.68048 * 295.24370 * 11 9 7 24 24 H 1.08002 * 119.85689 * 359.80458 * 14 13 12 25 25 H 1.08005 * 120.04730 * 180.02562 * 15 14 13 26 26 H 0.96698 * 113.99478 * 270.01464 * 17 16 15 27 27 H 1.08003 * 119.86326 * 179.97438 * 18 16 15 28 28 H 1.08999 * 109.43722 * 102.25770 * 20 19 13 29 29 H 1.08993 * 109.43377 * 222.13601 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6158 -2.5558 -0.8856 11 6 0.3887 -2.6004 1.2633 12 8 -0.3898 -3.7950 1.1830 13 6 0.2509 -4.9510 0.8644 14 6 -0.3900 -6.1576 1.1267 15 6 0.2234 -7.3535 0.8156 16 6 1.4851 -7.3539 0.2391 17 8 2.0926 -8.5308 -0.0694 18 6 2.1253 -6.1532 -0.0205 19 6 1.5104 -4.9522 0.2919 20 6 2.2412 -3.6665 -0.0021 21 1 -0.4850 0.8400 0.0004 22 1 -0.2715 -1.7355 1.3278 23 1 1.0309 -2.6392 2.1432 24 1 -1.3721 -6.1582 1.5762 25 1 -0.2780 -8.2878 1.0206 26 1 2.6352 -8.8923 0.6447 27 1 3.1078 -6.1537 -0.4690 28 1 3.0007 -3.4982 0.7614 29 1 2.7192 -3.7363 -0.9792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259722753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -89.326412 kcal Electronic energy + Delta-G solvation = -14569.277016 eV Core-core repulsion = 12035.361577 eV Total energy + Delta-G solvation = -2533.915439 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.52184 -39.43729 -36.78310 -36.13634 -33.96101 -31.31977 -30.15547 -27.17683 -26.32708 -23.79217 -23.42746 -20.91775 -18.90350 -18.63411 -18.41675 -17.51104 -16.43582 -16.13827 -15.84216 -15.32592 -15.03819 -14.73021 -14.23085 -14.17015 -13.76620 -13.53767 -12.89080 -12.83407 -12.48391 -12.43199 -11.96687 -11.59636 -11.55083 -11.16048 -10.85010 -10.56247 -9.76403 -8.87239 -8.21184 -6.36304 0.33008 0.38023 1.42403 1.43313 1.54009 2.37673 2.55746 2.75351 3.09535 3.36183 3.88769 3.91983 4.26650 4.28754 4.40245 4.53711 4.67509 4.73491 4.86948 4.99133 5.08944 5.21062 5.41445 5.45898 5.58461 5.59892 5.75472 5.78941 6.15313 6.63974 6.75431 6.95984 7.33913 8.86088 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.059022 B = 0.007188 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.288594 B = 3894.714210 C = 4286.244391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.014 3.986 10 H 0.000 1.000 11 C 0.073 3.927 12 O -0.342 6.342 13 C 0.099 3.901 14 C -0.145 4.145 15 C -0.110 4.110 16 C 0.066 3.934 17 O -0.502 6.502 18 C -0.117 4.117 19 C -0.154 4.154 20 C -0.065 4.065 21 H 0.267 0.733 22 H 0.107 0.893 23 H 0.042 0.958 24 H 0.145 0.855 25 H 0.162 0.838 26 H 0.406 0.594 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -12.019 3.339 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.084 0.916 9 C -0.004 4.004 10 H 0.018 0.982 11 C -0.001 4.001 12 O -0.257 6.257 13 C 0.054 3.946 14 C -0.164 4.164 15 C -0.128 4.128 16 C 0.022 3.978 17 O -0.314 6.314 18 C -0.136 4.136 19 C -0.155 4.155 20 C -0.102 4.102 21 H 0.076 0.924 22 H 0.125 0.875 23 H 0.060 0.940 24 H 0.162 0.838 25 H 0.180 0.820 26 H 0.265 0.735 27 H 0.158 0.842 28 H 0.092 0.908 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.704 -11.792 2.850 12.429 hybrid contribution 0.596 1.235 0.237 1.391 sum 3.300 -10.557 3.087 11.484 Atomic orbital electron populations 1.69970 1.07440 1.27957 1.50504 1.25867 0.95729 1.02939 0.94056 0.85439 0.78731 0.78535 0.78297 1.20202 1.20736 1.18777 1.21380 0.93463 0.90742 1.51726 0.91614 1.19213 0.93907 0.93982 0.93343 0.98162 1.23210 0.95423 0.83160 0.98307 1.85928 1.39028 1.15880 1.84872 1.19329 0.92189 0.87096 0.96007 1.20717 1.02031 0.89094 1.04553 1.21375 0.95107 0.98230 0.98117 1.18248 0.93117 0.85215 1.01232 1.84812 1.67233 1.34887 1.44518 1.21309 1.00856 0.90636 1.00752 1.20114 0.95660 0.96726 1.02961 1.20532 0.97676 0.90452 1.01534 0.92419 0.87503 0.93964 0.83760 0.82019 0.73540 0.84193 0.90821 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 11.41 21.44 0.24 -52.09 15 2 C 0.01 0.72 5.30 84.65 0.45 1.17 15 3 Si 0.97 42.21 29.54 68.60 2.03 44.24 15 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 7 C -0.54 -28.81 8.53 25.60 0.22 -28.59 15 8 H 0.07 3.40 7.75 -2.91 -0.02 3.37 15 9 C 0.01 0.73 2.31 -11.37 -0.03 0.71 15 10 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 11 C 0.07 3.67 6.15 72.13 0.44 4.11 15 12 O -0.34 -16.07 10.27 -93.04 -0.96 -17.02 15 13 C 0.10 4.04 6.47 22.51 0.15 4.18 15 14 C -0.15 -4.72 9.93 22.41 0.22 -4.49 15 15 C -0.11 -2.95 9.98 22.32 0.22 -2.73 15 16 C 0.07 1.85 6.70 22.45 0.15 2.00 15 17 O -0.50 -11.23 13.51 -93.40 -1.26 -12.49 15 18 C -0.12 -3.74 9.60 22.40 0.22 -3.53 15 19 C -0.15 -6.00 5.75 -19.75 -0.11 -6.11 15 20 C -0.06 -2.76 5.13 29.90 0.15 -2.61 15 21 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 22 H 0.11 5.87 6.12 -2.39 -0.01 5.86 15 23 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.14 4.12 8.06 -2.91 -0.02 4.09 15 25 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 26 H 0.41 4.72 9.06 -74.06 -0.67 4.05 15 27 H 0.14 3.93 8.06 -2.91 -0.02 3.91 15 28 H 0.07 2.99 8.09 -2.39 -0.02 2.97 15 29 H 0.07 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -62.93 249.84 2.63 -60.30 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.49 Total: 12.95 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 2.08 Total: -35.89 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.09 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -2.22 Total: -29.51 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -62.93 2.63 -60.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259722753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.022 kcal (2) G-P(sol) polarization free energy of solvation -62.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds