Wall clock time and date at job start Mon Mar 30 2020 03:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99638 * 2 1 4 4 H 1.48509 * 109.46971 * 264.86355 * 3 2 1 5 5 H 1.48493 * 109.47458 * 24.86326 * 3 2 1 6 6 H 1.48497 * 109.47083 * 144.86610 * 3 2 1 7 7 C 1.37874 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99757 * 1.91246 * 7 2 1 9 9 C 1.50698 * 120.00249 * 181.90755 * 7 2 1 10 10 H 1.08993 * 109.69666 * 333.23596 * 9 7 2 11 11 C 1.53412 * 109.69871 * 93.79225 * 9 7 2 12 12 O 1.42828 * 108.36148 * 184.38637 * 11 9 7 13 13 C 1.35930 * 117.85551 * 310.88269 * 12 11 9 14 14 C 1.39591 * 118.48093 * 196.96065 * 13 12 11 15 15 O 1.35994 * 119.93996 * 0.26243 * 14 13 12 16 16 C 1.38367 * 120.12381 * 180.23387 * 14 13 12 17 17 C 1.38285 * 119.89503 * 0.33881 * 16 14 13 18 18 C 1.38066 * 120.01993 * 359.37671 * 17 16 14 19 19 C 1.38177 * 121.84165 * 17.15358 * 13 12 11 20 20 C 1.50777 * 121.40420 * 359.55016 * 19 13 12 21 21 H 0.96995 * 119.99966 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.68846 * 64.66633 * 11 9 7 23 23 H 1.09008 * 109.71833 * 304.12127 * 11 9 7 24 24 H 0.96697 * 113.99465 * 269.97665 * 15 14 13 25 25 H 1.08002 * 120.05388 * 180.02562 * 16 14 13 26 26 H 1.08001 * 119.99136 * 179.63090 * 17 16 14 27 27 H 1.08005 * 119.79195 * 180.23634 * 18 17 16 28 28 H 1.09003 * 109.43289 * 257.76490 * 20 19 13 29 29 H 1.09002 * 109.40186 * 137.87409 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6051 1.9838 -1.3945 5 1 1.3965 2.6815 0.5886 6 1 3.4882 1.4740 0.8057 7 6 2.0046 -1.1940 -0.0005 8 1 1.4650 -2.1291 -0.0322 9 6 3.5110 -1.1944 0.0429 10 1 3.8913 -0.2705 -0.3927 11 6 3.9864 -1.3146 1.4965 12 8 5.4106 -1.2090 1.5144 13 6 6.1155 -1.9787 0.6434 14 6 7.4791 -2.1675 0.8750 15 8 8.0702 -1.5911 1.9556 16 6 8.2302 -2.9406 0.0074 17 6 7.6295 -3.5210 -1.0947 18 6 6.2797 -3.3397 -1.3212 19 6 5.5201 -2.5681 -0.4553 20 6 4.0495 -2.3947 -0.7395 21 1 -0.4850 0.8400 -0.0004 22 1 3.6846 -2.2800 1.9029 23 1 3.5512 -0.5129 2.0933 24 1 8.4228 -0.7068 1.7859 25 1 9.2850 -3.0863 0.1878 26 1 8.2156 -4.1198 -1.7761 27 1 5.8136 -3.7979 -2.1810 28 1 3.5133 -3.2945 -0.4377 29 1 3.9043 -2.2267 -1.8066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:19 Heat of formation + Delta-G solvation = -88.394593 kcal Electronic energy + Delta-G solvation = -14762.838666 eV Core-core repulsion = 12228.963634 eV Total energy + Delta-G solvation = -2533.875032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.67560 -39.04408 -37.54846 -35.88749 -33.89250 -31.72328 -30.26408 -27.24876 -26.53811 -23.80415 -23.12676 -20.74599 -19.42217 -18.97463 -18.35333 -17.46930 -16.73537 -16.23634 -15.72019 -15.38681 -15.02209 -14.79963 -14.70113 -14.41556 -13.91345 -13.30463 -12.98486 -12.73486 -12.60000 -12.10016 -11.91884 -11.84864 -11.64478 -11.31792 -11.03303 -10.77035 -9.53494 -9.02816 -8.37508 -6.44200 0.27497 0.43925 1.29862 1.33591 1.43915 2.27689 2.40129 2.73464 2.96242 3.30428 3.89085 4.01378 4.11239 4.20714 4.37392 4.45459 4.53779 4.59125 4.76637 4.79454 4.98893 5.24991 5.31428 5.34330 5.45055 5.50382 5.61166 5.87506 6.16594 6.43655 6.64454 6.91695 7.23117 8.78315 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.041637 B = 0.009039 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.317601 B = 3096.967516 C = 3440.016004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.518 4.518 8 H 0.043 0.957 9 C -0.016 4.016 10 H 0.037 0.963 11 C 0.067 3.933 12 O -0.334 6.334 13 C 0.076 3.924 14 C 0.056 3.944 15 O -0.501 6.501 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.158 4.158 20 C -0.062 4.062 21 H 0.269 0.731 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.400 0.600 25 H 0.161 0.839 26 H 0.164 0.836 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.796 -3.566 -2.109 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.061 0.939 9 C -0.035 4.035 10 H 0.055 0.945 11 C -0.008 4.008 12 O -0.249 6.249 13 C 0.031 3.969 14 C 0.011 3.989 15 O -0.312 6.312 16 C -0.134 4.134 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.159 4.159 20 C -0.099 4.099 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.257 0.743 25 H 0.178 0.822 26 H 0.182 0.818 27 H 0.164 0.836 28 H 0.085 0.915 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.536 -3.836 -1.675 17.057 hybrid contribution -0.601 1.244 -0.102 1.386 sum 15.935 -2.591 -1.777 16.242 Atomic orbital electron populations 1.70013 1.08013 1.28386 1.51327 1.25848 0.95395 1.02613 0.93647 0.85927 0.79330 0.79271 0.79617 1.19071 1.20813 1.17666 1.21006 0.89826 0.93525 1.51174 0.93864 1.19683 0.95244 0.95959 0.92608 0.94481 1.23465 0.75665 1.01612 1.00081 1.85908 1.21348 1.61150 1.56482 1.19671 0.92354 0.94368 0.90546 1.18253 0.88113 1.01538 0.91029 1.84796 1.76758 1.36337 1.33289 1.21478 1.01102 0.97510 0.93265 1.21278 0.94288 1.01226 0.98065 1.21278 0.94472 0.96990 0.98898 1.20233 0.97539 1.02153 0.95984 1.20473 0.89660 0.98644 1.01102 0.92135 0.92838 0.88925 0.74263 0.82155 0.81808 0.83625 0.91456 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.84 13.96 21.45 0.30 -56.54 15 2 C 0.02 1.35 5.47 84.65 0.46 1.82 15 3 Si 0.93 43.57 26.69 68.60 1.83 45.40 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 6 H -0.25 -11.33 6.84 99.48 0.68 -10.65 15 7 C -0.52 -28.60 8.86 25.60 0.23 -28.37 15 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 15 9 C -0.02 -0.74 1.90 -11.38 -0.02 -0.76 15 10 H 0.04 1.77 5.55 -2.39 -0.01 1.75 15 11 C 0.07 2.95 6.27 72.12 0.45 3.40 15 12 O -0.33 -14.18 10.00 -77.39 -0.77 -14.96 15 13 C 0.08 2.87 6.48 22.58 0.15 3.02 15 14 C 0.06 1.74 6.72 22.63 0.15 1.90 15 15 O -0.50 -14.51 13.21 -78.11 -1.03 -15.55 15 16 C -0.12 -2.74 9.98 22.31 0.22 -2.52 15 17 C -0.13 -2.86 10.04 22.24 0.22 -2.64 15 18 C -0.10 -2.67 9.66 22.33 0.22 -2.46 15 19 C -0.16 -5.61 5.75 -19.76 -0.11 -5.73 15 20 C -0.06 -2.47 5.17 29.89 0.15 -2.31 15 21 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 22 H 0.05 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.09 4.14 7.83 -2.38 -0.02 4.12 15 24 H 0.40 7.89 9.06 -74.06 -0.67 7.22 15 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 15 26 H 0.16 2.28 8.06 -2.91 -0.02 2.26 15 27 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 28 H 0.07 2.72 8.09 -2.39 -0.02 2.70 15 29 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -66.87 248.58 2.91 -63.95 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.47 Total: 12.34 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.12 Total: -34.65 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.30 Total: -56.54 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.81 Total: -30.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.83 Total: 45.40 kcal Total: -66.87 2.91 -63.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.441 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds