Wall clock time and date at job start Mon Mar 30 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47054 * 270.00339 * 3 2 1 5 5 H 1.48505 * 109.47061 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.47598 * 150.00147 * 3 2 1 7 7 C 1.37878 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99593 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00554 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.38251 * 119.95295 * 265.25367 * 10 9 7 12 12 C 1.38241 * 120.09382 * 180.29768 * 11 10 9 13 13 C 1.38142 * 120.02742 * 359.52643 * 12 11 10 14 14 C 1.38804 * 119.99016 * 0.21917 * 13 12 11 15 15 C 1.38210 * 119.94558 * 85.00386 * 10 9 7 16 16 C 1.50791 * 119.66170 * 359.79557 * 15 10 9 17 17 O 1.43079 * 109.29532 * 163.99351 * 16 15 10 18 18 C 1.43266 * 113.02481 * 48.60789 * 17 16 15 19 19 O 1.35970 * 119.59003 * 179.80808 * 14 13 12 20 20 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46533 * 60.00270 * 9 7 2 22 22 H 1.09000 * 109.47053 * 300.00659 * 9 7 2 23 23 H 1.08004 * 119.95644 * 0.02829 * 11 10 9 24 24 H 1.08002 * 119.99029 * 179.81280 * 12 11 10 25 25 H 1.08000 * 120.00400 * 180.23498 * 13 12 11 26 26 H 1.09005 * 109.49615 * 44.05336 * 16 15 10 27 27 H 1.08999 * 109.52805 * 283.96702 * 16 15 10 28 28 H 1.09004 * 109.61065 * 174.78310 * 18 17 16 29 29 H 1.09000 * 109.61425 * 54.26235 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.3378 -3.2324 1.1928 12 6 4.8047 -4.5336 1.1958 13 6 4.9390 -5.2225 0.0060 14 6 4.6094 -4.6066 -1.1935 15 6 4.1450 -3.3004 -1.1939 16 6 3.7790 -2.6207 -2.4893 17 8 4.3348 -3.3570 -3.5830 18 6 4.0708 -4.7629 -3.5037 19 8 4.7485 -5.2910 -2.3601 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8890 22 1 3.8745 -0.6800 -0.8911 23 1 4.2302 -2.6960 2.1240 24 1 5.0602 -5.0133 2.1290 25 1 5.3002 -6.2403 0.0091 26 1 4.1782 -1.6064 -2.4933 27 1 2.6941 -2.5852 -2.5883 28 1 4.4360 -5.2551 -4.4051 29 1 2.9982 -4.9287 -3.4023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748143.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:39 Heat of formation + Delta-G solvation = -66.832013 kcal Electronic energy + Delta-G solvation = -14766.656025 eV Core-core repulsion = 12233.716016 eV Total energy + Delta-G solvation = -2532.940008 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.52370 -37.65160 -36.17013 -33.44799 -31.73571 -30.55793 -27.78494 -26.13960 -25.36258 -23.11503 -20.71478 -20.22962 -17.89459 -16.92491 -16.58773 -16.37958 -15.15451 -14.68256 -14.23519 -14.07519 -13.83868 -13.41077 -13.13048 -12.50572 -12.17212 -12.05610 -11.59174 -11.22305 -11.07891 -10.70005 -10.34297 -10.25392 -10.02774 -9.69231 -9.43987 -8.66788 -8.04495 -7.71659 -6.16322 -4.16781 1.77411 1.94230 3.22472 3.31325 3.33354 3.47134 3.89811 4.27146 4.33540 4.98629 5.11721 5.15515 5.26960 5.35514 5.54599 5.76253 5.79114 5.92472 6.07729 6.25475 6.47343 6.65243 6.71239 6.87047 6.90885 7.00836 7.25878 7.44728 7.57177 7.74628 8.38999 8.87735 9.43240 10.96219 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.009724 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.157036 B = 2878.753802 C = 3368.955244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.011 3.989 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.125 3.875 15 C -0.199 4.199 16 C 0.105 3.895 17 O -0.395 6.395 18 C 0.223 3.777 19 O -0.339 6.339 20 H 0.265 0.735 21 H 0.032 0.968 22 H 0.026 0.974 23 H 0.123 0.877 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 -7.192 -2.820 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.026 4.026 10 C 0.010 3.990 11 C -0.170 4.170 12 C -0.105 4.105 13 C -0.189 4.189 14 C 0.081 3.919 15 C -0.200 4.200 16 C 0.030 3.970 17 O -0.315 6.315 18 C 0.110 3.890 19 O -0.256 6.256 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.141 0.859 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.566 -7.149 -3.018 11.558 hybrid contribution -0.033 0.900 0.178 0.918 sum 8.533 -6.249 -2.840 10.951 Atomic orbital electron populations 1.69887 1.06261 1.27130 1.50154 1.24976 0.94721 0.98980 0.94308 0.86848 0.80487 0.83705 0.78804 1.20000 1.21109 1.18850 1.20831 0.87870 0.94693 1.51938 0.90804 1.18888 0.97707 0.88349 0.97673 1.19902 0.90739 0.97485 0.90870 1.20986 1.02656 0.95274 0.98043 1.20863 0.98343 0.94555 0.96745 1.20283 1.08273 1.00422 0.89918 1.18483 0.97988 0.90011 0.85391 1.20091 1.08415 0.94267 0.97223 1.21628 0.99320 0.94930 0.81094 1.88211 1.77754 1.19040 1.46467 1.24299 0.95908 0.80866 0.87953 1.86152 1.70685 1.51800 1.16923 0.92460 0.94983 0.95578 0.85902 0.85986 0.85989 0.86787 0.89891 0.84863 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.87 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -5.98 6.54 56.52 0.37 -5.61 15 7 C -0.52 -14.03 9.64 -34.44 -0.33 -14.36 15 8 H 0.07 2.22 7.98 -52.48 -0.42 1.80 15 9 C 0.01 0.25 3.66 -29.04 -0.11 0.14 15 10 C 0.01 0.22 5.07 -104.63 -0.53 -0.31 15 11 C -0.15 -2.85 9.67 -39.58 -0.38 -3.23 15 12 C -0.09 -1.42 10.04 -39.62 -0.40 -1.81 15 13 C -0.17 -2.86 9.98 -39.41 -0.39 -3.26 15 14 C 0.13 2.35 6.56 -39.23 -0.26 2.09 15 15 C -0.20 -4.00 5.82 -104.44 -0.61 -4.60 15 16 C 0.11 2.00 6.15 36.05 0.22 2.23 15 17 O -0.40 -6.89 10.97 -59.11 -0.65 -7.54 15 18 C 0.22 3.26 7.94 101.05 0.80 4.07 15 19 O -0.34 -5.82 10.47 -43.53 -0.46 -6.27 15 20 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.03 0.73 7.11 -51.92 -0.37 0.36 15 22 H 0.03 0.59 5.81 -51.93 -0.30 0.28 15 23 H 0.12 2.16 8.06 -52.48 -0.42 1.73 15 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 26 H 0.11 2.13 6.63 -51.93 -0.34 1.78 15 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 15 28 H 0.13 1.43 8.14 -51.93 -0.42 1.00 15 29 H 0.06 0.81 8.12 -51.93 -0.42 0.39 15 LS Contribution 248.04 15.07 3.74 3.74 Total: -1.00 -30.39 248.04 -6.48 -36.87 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.14 Total: 0.21 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.08 Total: -17.14 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.77 Total: -25.87 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.10 Total: -13.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.39 -6.48 -36.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748143.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.966 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds