Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48498 * 109.47054 * 270.00339 * 3 2 1 5 5 H 1.48505 * 109.47061 * 30.00265 * 3 2 1 6 6 H 1.48501 * 109.47598 * 150.00147 * 3 2 1 7 7 C 1.37878 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99593 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00554 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47242 * 179.97438 * 9 7 2 11 11 C 1.38251 * 119.95295 * 265.25367 * 10 9 7 12 12 C 1.38241 * 120.09382 * 180.29768 * 11 10 9 13 13 C 1.38142 * 120.02742 * 359.52643 * 12 11 10 14 14 C 1.38804 * 119.99016 * 0.21917 * 13 12 11 15 15 C 1.38210 * 119.94558 * 85.00386 * 10 9 7 16 16 C 1.50791 * 119.66170 * 359.79557 * 15 10 9 17 17 O 1.43079 * 109.29532 * 163.99351 * 16 15 10 18 18 C 1.43266 * 113.02481 * 48.60789 * 17 16 15 19 19 O 1.35970 * 119.59003 * 179.80808 * 14 13 12 20 20 H 0.97002 * 119.99904 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46533 * 60.00270 * 9 7 2 22 22 H 1.09000 * 109.47053 * 300.00659 * 9 7 2 23 23 H 1.08004 * 119.95644 * 0.02829 * 11 10 9 24 24 H 1.08002 * 119.99029 * 179.81280 * 12 11 10 25 25 H 1.08000 * 120.00400 * 180.23498 * 13 12 11 26 26 H 1.09005 * 109.49615 * 44.05336 * 16 15 10 27 27 H 1.08999 * 109.52805 * 283.96702 * 16 15 10 28 28 H 1.09004 * 109.61065 * 174.78310 * 18 17 16 29 29 H 1.09000 * 109.61425 * 54.26235 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.3378 -3.2324 1.1928 12 6 4.8047 -4.5336 1.1958 13 6 4.9390 -5.2225 0.0060 14 6 4.6094 -4.6066 -1.1935 15 6 4.1450 -3.3004 -1.1939 16 6 3.7790 -2.6207 -2.4893 17 8 4.3348 -3.3570 -3.5830 18 6 4.0708 -4.7629 -3.5037 19 8 4.7485 -5.2910 -2.3601 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8890 22 1 3.8745 -0.6800 -0.8911 23 1 4.2302 -2.6960 2.1240 24 1 5.0602 -5.0133 2.1290 25 1 5.3002 -6.2403 0.0091 26 1 4.1782 -1.6064 -2.4933 27 1 2.6941 -2.5852 -2.5883 28 1 4.4360 -5.2551 -4.4051 29 1 2.9982 -4.9287 -3.4023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259748143.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = -86.125161 kcal Electronic energy + Delta-G solvation = -14767.492638 eV Core-core repulsion = 12233.716016 eV Total energy + Delta-G solvation = -2533.776622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89029 -39.04938 -37.55070 -35.33020 -33.48293 -32.02965 -29.52987 -27.48210 -26.74048 -24.94380 -22.19392 -21.70819 -19.29277 -19.00501 -17.97518 -17.71501 -16.59851 -16.30639 -15.86066 -15.50012 -15.28415 -15.01555 -14.66134 -14.26913 -13.69739 -13.55476 -13.24993 -12.80843 -12.58217 -12.41687 -11.92748 -11.82217 -11.75489 -11.47454 -11.10506 -10.79354 -9.52947 -9.13984 -8.31181 -6.36654 0.36291 0.49658 1.36600 1.38390 1.49472 2.17853 2.33954 2.62005 2.84716 3.03237 3.63973 3.80760 3.91393 4.17003 4.27632 4.33559 4.42942 4.47981 4.68252 4.78929 4.93036 5.02464 5.14369 5.30428 5.45954 5.52641 5.60137 5.85968 5.90886 6.22449 6.37583 6.68772 7.26901 8.85006 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.009724 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.157036 B = 2878.753802 C = 3368.955244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.515 4.515 8 H 0.028 0.972 9 C 0.018 3.982 10 C -0.022 4.022 11 C -0.165 4.165 12 C -0.075 4.075 13 C -0.165 4.165 14 C 0.112 3.888 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.400 6.400 18 C 0.212 3.788 19 O -0.340 6.340 20 H 0.268 0.732 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.130 0.870 24 H 0.164 0.836 25 H 0.153 0.847 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.179 0.821 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 -7.865 -2.631 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.552 4.552 8 H 0.046 0.954 9 C -0.019 4.019 10 C -0.022 4.022 11 C -0.183 4.183 12 C -0.092 4.092 13 C -0.184 4.184 14 C 0.067 3.933 15 C -0.220 4.220 16 C 0.035 3.965 17 O -0.320 6.320 18 C 0.100 3.900 19 O -0.257 6.257 20 H 0.077 0.923 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.148 0.852 24 H 0.182 0.818 25 H 0.171 0.829 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.195 0.805 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.641 -7.841 -2.836 13.519 hybrid contribution -0.698 0.929 0.094 1.166 sum 9.943 -6.912 -2.742 12.416 Atomic orbital electron populations 1.70041 1.08264 1.28290 1.52026 1.25895 0.95499 1.03100 0.93902 0.85755 0.79674 0.78460 0.79473 1.18916 1.20913 1.16799 1.20980 0.90231 0.92920 1.51106 0.95379 1.18720 0.94696 0.90526 0.97962 1.19857 0.93071 0.96846 0.92405 1.21221 1.02918 0.96659 0.97484 1.21284 0.96242 0.93302 0.98398 1.20748 1.06704 1.01669 0.89252 1.18762 0.98053 0.89729 0.86728 1.20223 1.09326 0.95317 0.97096 1.21418 0.98067 0.95319 0.81726 1.88190 1.77588 1.20523 1.45720 1.24877 0.96639 0.79668 0.88817 1.86147 1.70897 1.51686 1.16951 0.92310 0.94520 0.94886 0.85168 0.81832 0.82920 0.87048 0.91934 0.80455 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 13.96 21.45 0.30 -57.73 15 2 C 0.01 0.77 5.47 84.66 0.46 1.24 15 3 Si 0.94 42.62 27.47 68.60 1.88 44.50 15 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.24 -10.20 6.54 99.48 0.65 -9.55 15 7 C -0.51 -28.89 9.64 25.60 0.25 -28.64 15 8 H 0.03 1.78 7.98 -2.91 -0.02 1.76 15 9 C 0.02 0.83 3.66 29.10 0.11 0.94 15 10 C -0.02 -0.91 5.07 -19.87 -0.10 -1.01 15 11 C -0.16 -5.97 9.67 22.27 0.22 -5.75 15 12 C -0.07 -2.20 10.04 22.25 0.22 -1.98 15 13 C -0.17 -5.06 9.98 22.38 0.22 -4.83 15 14 C 0.11 4.01 6.56 22.50 0.15 4.15 15 15 C -0.22 -8.76 5.82 -19.75 -0.11 -8.87 15 16 C 0.11 4.26 6.15 71.26 0.44 4.70 15 17 O -0.40 -13.67 10.97 -126.15 -1.38 -15.05 15 18 C 0.21 5.83 7.94 113.37 0.90 6.74 15 19 O -0.34 -10.96 10.47 -70.38 -0.74 -11.70 15 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 21 H 0.04 1.65 7.11 -2.38 -0.02 1.63 15 22 H 0.03 1.47 5.81 -2.39 -0.01 1.46 15 23 H 0.13 4.40 8.06 -2.91 -0.02 4.38 15 24 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.15 3.70 8.06 -2.91 -0.02 3.68 15 26 H 0.11 4.24 6.63 -2.38 -0.02 4.23 15 27 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.18 3.22 8.14 -2.38 -0.02 3.20 15 29 H 0.06 1.68 8.12 -2.39 -0.02 1.66 15 Total: -1.00 -66.91 248.04 3.91 -63.00 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.10 Total: 10.30 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 2.75 Total: -33.32 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.30 Total: -57.73 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -2.12 Total: -26.75 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Total: -66.91 3.91 -63.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748143.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.122 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds