Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99520 * 2 1 4 4 H 1.48504 * 109.46911 * 270.00069 * 3 2 1 5 5 H 1.48492 * 109.47291 * 30.00554 * 3 2 1 6 6 H 1.48499 * 109.46877 * 150.00362 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00360 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47205 * 179.97438 * 9 7 2 11 11 N 1.30983 * 126.43987 * 89.98607 * 10 9 7 12 12 C 1.35217 * 105.57953 * 180.02562 * 11 10 9 13 13 C 1.48412 * 126.41195 * 180.02562 * 12 11 10 14 14 C 1.40848 * 126.03748 * 179.69657 * 13 12 11 15 15 C 1.35065 * 107.85349 * 179.82368 * 14 13 12 16 16 N 1.35053 * 107.98252 * 0.43120 * 15 14 13 17 17 H 0.97001 * 125.93370 * 179.70499 * 16 15 14 18 18 N 1.31642 * 126.03615 * 0.02562 * 13 12 11 19 19 N 1.30767 * 107.17434 * 359.97438 * 12 11 10 20 20 O 1.21293 * 110.09641 * 0.02562 * 19 12 11 21 21 H 0.97002 * 120.00091 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47098 * 59.99724 * 9 7 2 23 23 H 1.08997 * 109.46812 * 300.00252 * 9 7 2 24 24 H 1.08001 * 126.07647 * 359.97438 * 14 13 12 25 25 H 1.07997 * 126.01108 * 180.19138 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6146 -0.0010 11 7 4.2727 -3.3485 -1.0547 12 6 4.6937 -4.5398 -0.5731 13 6 5.1096 -5.7170 -1.3753 14 6 5.5527 -6.9528 -0.8651 15 6 5.8307 -7.7579 -1.9134 16 7 5.5862 -7.0658 -3.0470 17 1 5.7030 -7.3956 -3.9517 18 7 5.1354 -5.7886 -2.6896 19 7 4.6667 -4.4600 0.7319 20 8 4.2791 -3.3629 1.0745 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6802 0.8888 23 1 3.8745 -0.6798 -0.8911 24 1 5.6504 -7.2116 0.1789 25 1 6.1894 -8.7749 -1.8553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259752764.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = 143.075053 kcal Electronic energy + Delta-G solvation = -13743.528284 eV Core-core repulsion = 11148.442937 eV Total energy + Delta-G solvation = -2595.085347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.86140 -41.16068 -35.33849 -33.93256 -32.34302 -31.14872 -30.17158 -28.97308 -24.67212 -23.82030 -21.83485 -21.45923 -19.61766 -18.24326 -17.67952 -16.72097 -16.67353 -14.75959 -14.73822 -14.56541 -13.78908 -13.63987 -13.12409 -12.64425 -12.33373 -11.65403 -11.53631 -11.12606 -10.89073 -10.71043 -10.40377 -10.32046 -9.79852 -9.53720 -9.01888 -8.77129 -8.73088 -6.21511 -4.25881 1.31604 1.93391 2.40533 2.59362 3.23000 3.29761 3.30927 3.41363 3.60717 3.92420 4.28432 4.38571 4.81063 5.11045 5.25622 5.46845 5.59158 5.88944 6.22837 6.38343 6.50727 6.63672 6.83309 7.08692 7.34081 7.46024 8.25735 8.77097 8.78606 9.32385 10.90653 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.058048 B = 0.006064 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.246315 B = 4616.315971 C = 4748.343892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.069 3.931 10 C 0.245 3.755 11 N -0.480 5.480 12 C 0.230 3.770 13 C 0.159 3.841 14 C -0.239 4.239 15 C 0.055 3.945 16 N -0.471 5.471 17 H 0.443 0.557 18 N -0.243 5.243 19 N -0.380 5.380 20 O 0.075 5.925 21 H 0.269 0.731 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.156 0.844 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -11.483 -2.445 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.096 0.904 9 C 0.030 3.970 10 C 0.026 3.974 11 N -0.213 5.213 12 C -0.042 4.042 13 C -0.008 4.008 14 C -0.270 4.270 15 C -0.091 4.091 16 N -0.182 5.182 17 H 0.287 0.713 18 N -0.070 5.070 19 N -0.091 5.091 20 O 0.016 5.984 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.174 0.826 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 11.836 -11.490 -3.417 16.846 hybrid contribution 0.382 0.253 0.261 0.527 sum 12.218 -11.237 -3.156 16.897 Atomic orbital electron populations 1.69865 1.06276 1.27505 1.48789 1.24855 0.94830 0.98965 0.93796 0.86807 0.80435 0.83333 0.79057 1.19668 1.20752 1.18526 1.20629 0.86683 0.95574 1.53819 0.90385 1.18606 0.98328 0.79614 1.00429 1.29494 0.90444 0.98661 0.78811 1.72170 1.19239 1.01370 1.28556 1.22384 1.01922 0.92569 0.87324 1.18718 1.00747 0.91156 0.90161 1.21477 1.11932 0.92826 1.00747 1.22526 1.01587 0.99018 0.85998 1.46412 1.52808 1.10206 1.08734 0.71280 1.77791 1.18972 0.97364 1.12844 1.74782 1.19208 1.01011 1.14095 1.85272 1.59762 1.16983 1.36411 0.92074 0.92257 0.91736 0.82649 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 15 3 Si 0.88 19.93 27.47 -169.99 -4.67 15.26 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 15 7 C -0.53 -14.55 9.65 -34.44 -0.33 -14.88 15 8 H 0.08 2.39 7.98 -52.48 -0.42 1.97 15 9 C 0.07 1.59 4.67 -29.04 -0.14 1.45 15 10 C 0.24 5.50 7.69 -12.99 -0.10 5.40 15 11 N -0.48 -11.07 11.58 -9.88 -0.11 -11.18 15 12 C 0.23 4.83 8.10 -156.12 -1.26 3.56 15 13 C 0.16 2.85 7.18 -82.77 -0.59 2.25 15 14 C -0.24 -3.23 10.76 -39.72 -0.43 -3.66 15 15 C 0.06 0.53 11.97 -17.26 -0.21 0.32 15 16 N -0.47 -5.19 7.35 30.42 0.22 -4.97 15 17 H 0.44 3.03 8.96 -182.61 -1.64 1.39 15 18 N -0.24 -4.13 12.74 33.43 0.43 -3.71 15 19 N -0.38 -7.83 12.19 30.97 0.38 -7.45 15 20 O 0.08 1.60 11.29 18.02 0.20 1.80 15 21 H 0.27 7.37 8.31 -40.82 -0.34 7.04 15 22 H 0.06 1.24 7.20 -51.93 -0.37 0.87 15 23 H 0.06 1.42 7.57 -51.93 -0.39 1.03 15 24 H 0.16 1.88 8.06 -52.49 -0.42 1.45 15 25 H 0.18 0.82 8.06 -52.49 -0.42 0.39 15 LS Contribution 238.94 15.07 3.60 3.60 Total: -1.00 -33.04 238.94 -5.17 -38.21 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -2.83 Total: -2.63 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.16 Total: -3.45 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 1.69 Total: -52.79 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.04 -5.17 -38.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752764.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.288 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds