Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99520 * 2 1 4 4 H 1.48504 * 109.46911 * 270.00069 * 3 2 1 5 5 H 1.48492 * 109.47291 * 30.00554 * 3 2 1 6 6 H 1.48499 * 109.46877 * 150.00362 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00360 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47205 * 179.97438 * 9 7 2 11 11 N 1.30983 * 126.43987 * 89.98607 * 10 9 7 12 12 C 1.35217 * 105.57953 * 180.02562 * 11 10 9 13 13 C 1.48412 * 126.41195 * 180.02562 * 12 11 10 14 14 C 1.40848 * 126.03748 * 179.69657 * 13 12 11 15 15 C 1.35065 * 107.85349 * 179.82368 * 14 13 12 16 16 N 1.35053 * 107.98252 * 0.43120 * 15 14 13 17 17 H 0.97001 * 125.93370 * 179.70499 * 16 15 14 18 18 N 1.31642 * 126.03615 * 0.02562 * 13 12 11 19 19 N 1.30767 * 107.17434 * 359.97438 * 12 11 10 20 20 O 1.21293 * 110.09641 * 0.02562 * 19 12 11 21 21 H 0.97002 * 120.00091 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47098 * 59.99724 * 9 7 2 23 23 H 1.08997 * 109.46812 * 300.00252 * 9 7 2 24 24 H 1.08001 * 126.07647 * 359.97438 * 14 13 12 25 25 H 1.07997 * 126.01108 * 180.19138 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6146 -0.0010 11 7 4.2727 -3.3485 -1.0547 12 6 4.6937 -4.5398 -0.5731 13 6 5.1096 -5.7170 -1.3753 14 6 5.5527 -6.9528 -0.8651 15 6 5.8307 -7.7579 -1.9134 16 7 5.5862 -7.0658 -3.0470 17 1 5.7030 -7.3956 -3.9517 18 7 5.1354 -5.7886 -2.6896 19 7 4.6667 -4.4600 0.7319 20 8 4.2791 -3.3629 1.0745 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6802 0.8888 23 1 3.8745 -0.6798 -0.8911 24 1 5.6504 -7.2116 0.1789 25 1 6.1894 -8.7749 -1.8553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752764.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 116.396689 kcal Electronic energy + Delta-G solvation = -13744.685145 eV Core-core repulsion = 11148.442937 eV Total energy + Delta-G solvation = -2596.242208 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.52012 -42.18932 -37.00607 -35.78431 -34.14897 -32.45433 -31.28096 -30.72888 -26.17113 -25.73231 -23.51067 -22.46716 -21.02523 -19.51583 -19.18735 -18.62480 -18.31586 -16.56228 -16.06920 -15.79989 -15.50845 -14.61630 -14.48115 -14.34555 -13.97094 -13.40716 -13.19351 -12.94063 -12.46991 -12.18395 -12.05450 -11.89899 -11.73468 -11.21271 -10.82101 -10.34667 -9.86889 -8.33549 -6.45852 -0.14993 0.60131 1.16768 1.46285 1.47906 1.58401 1.59854 1.90102 2.00621 2.36763 2.66280 2.91559 3.04873 3.93155 3.97333 4.23970 4.55998 4.68761 4.70562 4.82013 4.88893 5.06986 5.30585 5.32751 6.09165 6.27862 6.46679 6.56590 7.09611 7.17192 8.82824 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.058048 B = 0.006064 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.246315 B = 4616.315971 C = 4748.343892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.226 1.226 7 C -0.542 4.542 8 H 0.024 0.976 9 C 0.075 3.925 10 C 0.237 3.763 11 N -0.506 5.506 12 C 0.230 3.770 13 C 0.118 3.882 14 C -0.262 4.262 15 C 0.098 3.902 16 N -0.448 5.448 17 H 0.462 0.538 18 N -0.291 5.291 19 N -0.381 5.381 20 O 0.071 5.929 21 H 0.274 0.726 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.164 0.836 25 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.351 -12.239 -2.856 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.180 4.180 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.148 1.148 7 C -0.580 4.580 8 H 0.043 0.957 9 C 0.036 3.964 10 C 0.018 3.982 11 N -0.240 5.240 12 C -0.042 4.042 13 C -0.046 4.046 14 C -0.293 4.293 15 C -0.050 4.050 16 N -0.161 5.161 17 H 0.310 0.690 18 N -0.120 5.120 19 N -0.093 5.093 20 O 0.014 5.986 21 H 0.083 0.917 22 H 0.107 0.893 23 H 0.098 0.902 24 H 0.182 0.818 25 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 14.242 -12.257 -3.826 19.176 hybrid contribution -0.384 0.241 0.303 0.545 sum 13.858 -12.017 -3.523 18.678 Atomic orbital electron populations 1.70027 1.08639 1.29009 1.50271 1.25928 0.95696 1.03571 0.92764 0.85603 0.80149 0.76951 0.79744 1.18901 1.20555 1.14821 1.20758 0.89269 0.93823 1.54184 0.95749 1.18531 0.95106 0.80441 1.02323 1.29405 0.90862 0.98742 0.79221 1.72149 1.19956 1.02595 1.29256 1.22982 1.00690 0.92960 0.87615 1.18862 1.03242 0.91706 0.90837 1.21762 1.13178 0.91867 1.02468 1.23378 0.97574 1.00272 0.83736 1.46455 1.50700 1.08503 1.10461 0.68959 1.77659 1.20925 1.00720 1.12722 1.74733 1.19784 1.00615 1.14169 1.85246 1.60002 1.17220 1.36152 0.91730 0.89334 0.90217 0.81801 0.73766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.96 21.44 0.30 -57.09 15 2 C 0.02 1.09 5.47 84.65 0.46 1.55 15 3 Si 0.95 40.26 27.47 68.60 1.88 42.15 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 15 6 H -0.23 -8.21 6.54 99.48 0.65 -7.56 15 7 C -0.54 -30.71 9.65 25.60 0.25 -30.46 15 8 H 0.02 1.58 7.98 -2.91 -0.02 1.56 15 9 C 0.07 3.40 4.67 29.10 0.14 3.53 15 10 C 0.24 10.82 7.69 88.35 0.68 11.50 15 11 N -0.51 -23.87 11.58 -302.48 -3.50 -27.38 15 12 C 0.23 9.82 8.10 137.29 1.11 10.93 15 13 C 0.12 4.20 7.18 42.52 0.31 4.50 15 14 C -0.26 -6.54 10.76 22.18 0.24 -6.30 15 15 C 0.10 1.46 11.97 83.47 1.00 2.46 15 16 N -0.45 -8.53 7.35 -57.68 -0.42 -8.96 15 17 H 0.46 4.70 8.96 -213.33 -1.91 2.79 15 18 N -0.29 -9.73 12.74 -48.15 -0.61 -10.34 15 19 N -0.38 -15.95 12.19 -59.11 -0.72 -16.67 15 20 O 0.07 3.06 11.29 74.56 0.84 3.91 15 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 22 H 0.09 3.50 7.20 -2.39 -0.02 3.49 15 23 H 0.08 3.39 7.57 -2.39 -0.02 3.37 15 24 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 25 H 0.25 0.46 8.06 -2.91 -0.02 0.44 15 Total: -1.00 -76.66 238.94 1.22 -75.44 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -0.72 Total: 1.23 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.18 Total: -2.29 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -4.96 Total: -120.43 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: 0.84 Total: 3.91 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.88 Total: 42.15 kcal Total: -76.66 1.22 -75.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752764.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.832 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds