Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34634 * 127.26429 * 2 1 4 4 O 1.34647 * 109.31965 * 180.02562 * 3 2 1 5 5 C 1.32818 * 110.98444 * 359.92151 * 4 3 2 6 6 C 1.37539 * 107.75213 * 0.13835 * 5 4 3 7 7 C 1.46734 * 122.22142 * 179.86860 * 6 5 4 8 8 O 1.21331 * 122.44289 * 168.73984 * 7 6 5 9 9 C 1.52211 * 115.11543 * 348.75820 * 7 6 5 10 10 C 1.53223 * 108.27387 * 42.21007 * 9 7 6 11 11 H 1.09002 * 109.23441 * 56.01268 * 10 9 7 12 12 C 1.50702 * 109.23749 * 175.43395 * 10 9 7 13 13 H 1.07996 * 120.00314 * 120.57056 * 12 10 9 14 14 C 1.37875 * 119.99735 * 300.57821 * 12 10 9 15 15 N 1.31517 * 120.00341 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00150 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47112 * 89.99638 * 16 14 12 18 18 H 1.48497 * 109.47244 * 209.99959 * 16 14 12 19 19 H 1.48502 * 109.46715 * 330.00135 * 16 14 12 20 20 C 1.50646 * 129.44026 * 180.18652 * 5 4 3 21 21 H 1.09000 * 109.47720 * 269.97521 * 1 2 3 22 22 H 1.09007 * 109.47281 * 29.98147 * 1 2 3 23 23 H 1.08999 * 109.47304 * 149.97512 * 1 2 3 24 24 H 1.08007 * 125.33417 * 0.02808 * 3 2 1 25 25 H 1.09000 * 109.70392 * 282.51485 * 9 7 6 26 26 H 1.09007 * 109.74102 * 161.92934 * 9 7 6 27 27 H 0.96996 * 120.00557 * 180.02562 * 15 14 12 28 28 H 1.08994 * 109.45042 * 39.38372 * 20 5 4 29 29 H 1.09002 * 109.50031 * 279.30718 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3221 1.0715 0.0000 4 8 3.6031 0.6566 -0.0006 5 6 3.6735 -0.6697 0.0007 6 6 2.3877 -1.1579 -0.0009 7 6 2.0970 -2.5961 -0.0029 8 8 0.9835 -3.0354 0.1956 9 6 3.2941 -3.4969 -0.2717 10 6 4.4912 -2.9525 0.5147 11 1 4.2270 -2.8857 1.5701 12 6 5.6592 -3.8911 0.3538 13 1 6.5830 -3.5346 -0.0773 14 6 5.5484 -5.2049 0.7570 15 7 4.4236 -5.6390 1.2824 16 14 6.9960 -6.3685 0.5570 17 1 7.8390 -6.3244 1.7787 18 1 6.4949 -7.7512 0.3510 19 1 7.8048 -5.9550 -0.6177 20 6 4.8861 -1.5636 0.0045 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8902 -0.5136 23 1 -0.3634 -0.8897 -0.5142 24 1 1.9991 2.1021 0.0004 25 1 3.5232 -3.4954 -1.3374 26 1 3.0712 -4.5128 0.0547 27 1 4.3458 -6.5632 1.5664 28 1 5.6480 -1.1391 0.6581 29 1 5.2801 -1.6467 -1.0084 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259775323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -41.370027 kcal Electronic energy + Delta-G solvation = -14725.907896 eV Core-core repulsion = 12194.072002 eV Total energy + Delta-G solvation = -2531.835894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.22094 -38.21202 -35.50211 -33.50729 -32.31026 -29.02713 -28.15935 -26.69577 -25.00883 -22.14856 -20.93372 -19.39401 -17.95620 -16.70942 -16.31856 -15.74199 -14.81130 -14.53242 -13.89238 -13.59143 -13.49389 -13.16124 -12.84544 -12.68841 -12.37099 -12.10271 -11.63002 -11.05747 -10.93818 -10.77330 -10.38629 -10.08967 -9.76647 -9.49009 -9.05771 -8.65639 -8.43360 -7.95889 -6.14753 -4.25504 1.77907 2.30616 3.16884 3.24165 3.32133 3.34273 3.71145 4.31837 4.83922 5.11590 5.13598 5.22266 5.42084 5.80450 5.85301 5.94550 6.02863 6.10769 6.13520 6.38473 6.42244 6.60687 6.68484 6.81848 6.95303 7.46421 7.48615 7.66494 7.87085 8.15049 8.48137 8.77854 9.41536 10.90716 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046799 B = 0.008433 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.164181 B = 3319.348039 C = 3829.797434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.131 4.131 3 C -0.076 4.076 4 O -0.173 6.173 5 C 0.075 3.925 6 C -0.283 4.283 7 C 0.423 3.577 8 O -0.480 6.480 9 C -0.155 4.155 10 C 0.060 3.940 11 H 0.037 0.963 12 C -0.522 4.522 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.039 4.039 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.200 0.800 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.266 0.734 28 H 0.081 0.919 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 9.795 -3.008 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C -0.141 4.141 4 O -0.069 6.069 5 C 0.022 3.978 6 C -0.285 4.285 7 C 0.303 3.697 8 O -0.358 6.358 9 C -0.193 4.193 10 C 0.042 3.958 11 H 0.055 0.945 12 C -0.560 4.560 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.076 4.076 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.216 0.784 25 H 0.093 0.907 26 H 0.143 0.857 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.563 9.588 -2.827 10.319 hybrid contribution 0.555 -0.488 -0.039 0.740 sum -2.009 9.100 -2.865 9.749 Atomic orbital electron populations 1.20130 0.88977 1.02373 1.02220 1.21144 0.96677 0.91586 1.03848 1.23672 0.79755 0.99096 1.11612 1.83514 1.29655 1.22794 1.70898 1.24028 0.98161 0.80177 0.95483 1.22121 0.92786 0.96819 1.16783 1.22754 0.89928 0.87150 0.69857 1.90407 1.26591 1.79784 1.38969 1.22615 0.93041 1.02689 1.00934 1.18692 0.93599 0.87703 0.95837 0.94521 1.21009 0.98051 0.94563 1.42345 0.91769 1.25002 0.96052 0.98286 0.94536 1.69841 1.24879 1.16802 1.40592 0.86482 0.82249 0.80055 0.78594 1.20551 1.21101 1.19729 1.20769 0.90250 0.93356 1.03190 0.91353 0.92024 0.90863 0.78360 0.90680 0.85655 0.92421 0.90029 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.33 36.00 0.37 -0.80 15 2 C -0.13 -2.27 6.36 -103.02 -0.66 -2.93 15 3 C -0.08 -1.14 11.99 29.46 0.35 -0.79 15 4 O -0.17 -2.97 10.50 8.50 0.09 -2.88 15 5 C 0.07 1.43 7.39 -34.59 -0.26 1.17 15 6 C -0.28 -5.80 6.27 -103.84 -0.65 -6.45 15 7 C 0.42 9.73 7.09 -30.13 -0.21 9.51 15 8 O -0.48 -11.92 17.50 5.51 0.10 -11.83 15 9 C -0.15 -3.64 5.26 -27.02 -0.14 -3.78 15 10 C 0.06 1.41 2.03 -91.58 -0.19 1.23 15 11 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 12 C -0.52 -13.13 8.55 -34.44 -0.29 -13.42 15 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 14 C 0.06 1.67 5.29 -17.82 -0.09 1.57 15 15 N -0.88 -24.31 11.25 55.43 0.62 -23.69 15 16 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 20 C -0.04 -0.75 5.44 -27.84 -0.15 -0.90 15 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.06 0.69 8.14 -51.92 -0.42 0.27 15 23 H 0.07 1.18 7.77 -51.93 -0.40 0.77 15 24 H 0.20 2.02 8.06 -52.48 -0.42 1.60 15 25 H 0.07 1.65 8.14 -51.93 -0.42 1.23 15 26 H 0.13 3.33 5.92 -51.93 -0.31 3.03 15 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 29 H 0.09 1.60 8.13 -51.93 -0.42 1.18 15 LS Contribution 252.73 15.07 3.81 3.81 Total: -1.00 -29.02 252.73 -5.53 -34.55 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.21 Total: 0.53 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.92 Total: -15.57 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.62 Total: -23.69 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.19 Total: -14.71 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.02 -5.53 -34.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.820 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds