Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34634 * 127.26429 * 2 1 4 4 O 1.34647 * 109.31965 * 180.02562 * 3 2 1 5 5 C 1.32818 * 110.98444 * 359.92151 * 4 3 2 6 6 C 1.37539 * 107.75213 * 0.13835 * 5 4 3 7 7 C 1.46734 * 122.22142 * 179.86860 * 6 5 4 8 8 O 1.21331 * 122.44289 * 168.73984 * 7 6 5 9 9 C 1.52211 * 115.11543 * 348.75820 * 7 6 5 10 10 C 1.53223 * 108.27387 * 42.21007 * 9 7 6 11 11 H 1.09002 * 109.23441 * 56.01268 * 10 9 7 12 12 C 1.50702 * 109.23749 * 175.43395 * 10 9 7 13 13 H 1.07996 * 120.00314 * 120.57056 * 12 10 9 14 14 C 1.37875 * 119.99735 * 300.57821 * 12 10 9 15 15 N 1.31517 * 120.00341 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00150 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47112 * 89.99638 * 16 14 12 18 18 H 1.48497 * 109.47244 * 209.99959 * 16 14 12 19 19 H 1.48502 * 109.46715 * 330.00135 * 16 14 12 20 20 C 1.50646 * 129.44026 * 180.18652 * 5 4 3 21 21 H 1.09000 * 109.47720 * 269.97521 * 1 2 3 22 22 H 1.09007 * 109.47281 * 29.98147 * 1 2 3 23 23 H 1.08999 * 109.47304 * 149.97512 * 1 2 3 24 24 H 1.08007 * 125.33417 * 0.02808 * 3 2 1 25 25 H 1.09000 * 109.70392 * 282.51485 * 9 7 6 26 26 H 1.09007 * 109.74102 * 161.92934 * 9 7 6 27 27 H 0.96996 * 120.00557 * 180.02562 * 15 14 12 28 28 H 1.08994 * 109.45042 * 39.38372 * 20 5 4 29 29 H 1.09002 * 109.50031 * 279.30718 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3221 1.0715 0.0000 4 8 3.6031 0.6566 -0.0006 5 6 3.6735 -0.6697 0.0007 6 6 2.3877 -1.1579 -0.0009 7 6 2.0970 -2.5961 -0.0029 8 8 0.9835 -3.0354 0.1956 9 6 3.2941 -3.4969 -0.2717 10 6 4.4912 -2.9525 0.5147 11 1 4.2270 -2.8857 1.5701 12 6 5.6592 -3.8911 0.3538 13 1 6.5830 -3.5346 -0.0773 14 6 5.5484 -5.2049 0.7570 15 7 4.4236 -5.6390 1.2824 16 14 6.9960 -6.3685 0.5570 17 1 7.8390 -6.3244 1.7787 18 1 6.4949 -7.7512 0.3510 19 1 7.8048 -5.9550 -0.6177 20 6 4.8861 -1.5636 0.0045 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8902 -0.5136 23 1 -0.3634 -0.8897 -0.5142 24 1 1.9991 2.1021 0.0004 25 1 3.5232 -3.4954 -1.3374 26 1 3.0712 -4.5128 0.0547 27 1 4.3458 -6.5632 1.5664 28 1 5.6480 -1.1391 0.6581 29 1 5.2801 -1.6467 -1.0084 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259775323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = -58.300530 kcal Electronic energy + Delta-G solvation = -14726.642057 eV Core-core repulsion = 12194.072002 eV Total energy + Delta-G solvation = -2532.570055 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.61216 -40.01880 -37.30619 -34.85412 -34.15521 -30.66898 -29.80211 -28.06903 -26.79277 -23.75769 -22.70493 -20.80091 -19.53596 -18.53504 -17.86307 -17.20825 -16.68439 -16.18619 -15.61495 -15.28494 -15.13282 -14.76512 -14.27724 -14.00385 -13.87552 -13.56082 -13.20276 -12.86220 -12.55875 -12.42361 -12.23626 -11.90146 -11.57778 -11.36325 -10.58291 -10.48980 -10.32404 -9.33144 -8.13190 -6.30571 0.16635 1.00663 1.47105 1.48458 1.58446 1.81938 2.04316 2.45083 3.14010 3.37280 3.70985 3.80905 4.14402 4.36537 4.42440 4.47200 4.61245 4.74935 4.77561 4.84233 4.94434 5.04274 5.10831 5.21929 5.53650 5.54924 5.70940 5.91510 6.07004 6.19087 6.68692 6.81374 7.40623 8.91868 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.046799 B = 0.008433 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.164181 B = 3319.348039 C = 3829.797434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.159 4.159 3 C -0.043 4.043 4 O -0.167 6.167 5 C 0.076 3.924 6 C -0.315 4.315 7 C 0.419 3.581 8 O -0.512 6.512 9 C -0.152 4.152 10 C 0.061 3.939 11 H -0.001 1.001 12 C -0.529 4.529 13 H 0.078 0.922 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.964 3.036 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.259 1.259 20 C -0.030 4.030 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.256 0.744 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.099 0.901 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 12.295 -3.784 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.160 4.160 3 C -0.108 4.108 4 O -0.062 6.062 5 C 0.023 3.977 6 C -0.317 4.317 7 C 0.302 3.698 8 O -0.392 6.392 9 C -0.190 4.190 10 C 0.042 3.958 11 H 0.017 0.983 12 C -0.567 4.567 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.789 3.211 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.183 1.183 20 C -0.067 4.067 21 H 0.089 0.911 22 H 0.120 0.880 23 H 0.066 0.934 24 H 0.272 0.728 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.536 12.111 -3.613 12.732 hybrid contribution 0.210 -1.192 0.214 1.229 sum -1.326 10.919 -3.399 11.513 Atomic orbital electron populations 1.20165 0.87432 1.03130 1.02631 1.21511 0.98063 0.90960 1.05454 1.24666 0.78019 1.00648 1.07437 1.83546 1.30999 1.21278 1.70400 1.23778 0.97293 0.81157 0.95518 1.22088 0.94724 0.96005 1.18929 1.22848 0.89081 0.88880 0.68944 1.90377 1.27432 1.80625 1.40781 1.22468 0.93909 1.01148 1.01465 1.18574 0.93028 0.90334 0.93822 0.98267 1.21431 0.98885 0.94890 1.41490 0.90404 1.25843 0.98318 1.00161 0.94410 1.70017 1.27008 1.16897 1.42050 0.85462 0.79173 0.77568 0.78909 1.20256 1.21668 1.18255 1.20548 0.90730 0.91003 1.04412 0.91106 0.87976 0.93371 0.72814 0.89520 0.89242 0.92815 0.88302 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 10.33 71.23 0.74 -1.35 15 2 C -0.16 -5.12 6.36 -18.82 -0.12 -5.24 15 3 C -0.04 -1.10 11.99 66.99 0.80 -0.29 15 4 O -0.17 -5.12 10.50 7.51 0.08 -5.04 15 5 C 0.08 2.79 7.39 25.50 0.19 2.98 15 6 C -0.32 -12.76 6.27 -19.36 -0.12 -12.88 15 7 C 0.42 19.98 7.09 28.39 0.20 20.19 15 8 O -0.51 -26.66 17.50 -3.19 -0.06 -26.72 15 9 C -0.15 -7.41 5.26 30.41 0.16 -7.25 15 10 C 0.06 2.91 2.03 -11.42 -0.02 2.89 15 11 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 12 C -0.53 -26.61 8.55 25.60 0.22 -26.40 15 13 H 0.08 3.62 7.74 -2.91 -0.02 3.60 15 14 C 0.01 0.62 5.29 84.65 0.45 1.07 15 15 N -0.92 -52.58 11.25 21.45 0.24 -52.34 15 16 Si 0.96 41.34 29.54 68.60 2.03 43.37 15 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 20 C -0.03 -1.12 5.44 29.88 0.16 -0.96 15 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.10 1.88 8.14 -2.38 -0.02 1.86 15 23 H 0.05 1.53 7.77 -2.39 -0.02 1.51 15 24 H 0.26 3.38 8.06 -2.91 -0.02 3.36 15 25 H 0.09 3.91 8.14 -2.39 -0.02 3.89 15 26 H 0.09 5.04 5.92 -2.38 -0.01 5.03 15 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 15 29 H 0.11 3.63 8.13 -2.39 -0.02 3.61 15 Total: -1.00 -65.13 252.73 6.10 -59.03 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.16 Total: 8.95 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 2.65 Total: -27.25 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.24 Total: -52.34 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: 0.02 Total: -31.76 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.13 6.10 -59.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.732 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds