Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48495 * 109.46673 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46840 * 299.99524 * 3 2 1 6 6 H 1.48492 * 109.46917 * 59.99863 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47065 * 180.02562 * 9 7 2 11 11 O 1.20760 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00130 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.47357 * 179.97438 * 12 10 9 14 14 C 1.35898 * 116.99694 * 180.02562 * 13 12 10 15 15 C 1.38735 * 120.05254 * 179.97438 * 14 13 12 16 16 C 1.38144 * 119.94607 * 179.97438 * 15 14 13 17 17 C 1.38266 * 120.05233 * 0.02562 * 16 15 14 18 18 C 1.38269 * 120.11595 * 359.95530 * 17 16 15 19 19 C 1.38142 * 120.04935 * 0.04230 * 18 17 16 20 20 H 0.97000 * 120.00184 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47278 * 60.00293 * 9 7 2 22 22 H 1.09007 * 109.47168 * 299.99805 * 9 7 2 23 23 H 1.08999 * 109.46805 * 59.99823 * 12 10 9 24 24 H 1.08998 * 109.47364 * 300.00175 * 12 10 9 25 25 H 1.08002 * 120.02704 * 359.70561 * 15 14 13 26 26 H 1.08001 * 119.97447 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.94089 * 179.97438 * 17 16 15 28 28 H 1.07992 * 119.97577 * 180.02562 * 18 17 16 29 29 H 1.08005 * 120.02748 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 8 3.4176 -3.4239 0.0031 12 6 1.7280 -5.0654 0.0026 13 8 2.8395 -5.9636 0.0032 14 6 2.5582 -7.2932 0.0034 15 6 3.5892 -8.2214 0.0034 16 6 3.3008 -9.5724 0.0042 17 6 1.9858 -9.9997 0.0044 18 6 0.9564 -9.0766 0.0048 19 6 1.2397 -7.7245 0.0041 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 1.1229 -5.2373 -0.8875 24 1 1.1221 -5.2361 0.8924 25 1 4.6165 -7.8882 -0.0016 26 1 4.1030 -10.2955 0.0038 27 1 1.7623 -11.0563 0.0046 28 1 -0.0699 -9.4128 0.0055 29 1 0.4353 -7.0038 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259814615.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -55.988535 kcal Electronic energy + Delta-G solvation = -13759.446518 eV Core-core repulsion = 11226.976718 eV Total energy + Delta-G solvation = -2532.469800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.09430 -38.41879 -36.89737 -33.03723 -31.14658 -30.29447 -29.52116 -27.46239 -23.69628 -22.60441 -21.89480 -18.90011 -18.18177 -16.55200 -15.99827 -15.94803 -15.67679 -14.97645 -14.45695 -14.07949 -13.76705 -13.49547 -13.41944 -12.49536 -12.43832 -11.97686 -11.62927 -11.30972 -10.87976 -10.87689 -10.81736 -10.70081 -10.08310 -9.37020 -9.04588 -8.55588 -8.51758 -8.17067 -6.13874 -4.15233 1.30055 1.43921 2.86391 3.23978 3.28979 3.36494 3.45301 3.77210 4.39851 4.75114 4.83341 4.98449 5.08375 5.23991 5.27830 5.35139 5.42084 5.50240 5.61099 5.96889 6.29587 6.37676 6.41736 6.47893 6.75521 7.07811 7.20177 7.49789 7.86069 8.11220 8.53809 8.94663 9.50637 10.98094 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.079168 B = 0.004914 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.591724 B = 5696.729471 C = 6029.875451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.018 4.018 10 C 0.355 3.645 11 O -0.440 6.440 12 C 0.000 4.000 13 O -0.296 6.296 14 C 0.134 3.866 15 C -0.156 4.156 16 C -0.082 4.082 17 C -0.168 4.168 18 C -0.080 4.080 19 C -0.213 4.213 20 H 0.262 0.738 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -16.949 0.001 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.054 4.054 10 C 0.229 3.771 11 O -0.312 6.312 12 C -0.075 4.075 13 O -0.209 6.209 14 C 0.088 3.912 15 C -0.174 4.174 16 C -0.101 4.101 17 C -0.186 4.186 18 C -0.098 4.098 19 C -0.232 4.232 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.001 -16.593 0.002 16.624 hybrid contribution -0.142 0.788 -0.001 0.801 sum 0.860 -15.805 0.001 15.828 Atomic orbital electron populations 1.69959 1.06068 1.27006 1.50722 1.25004 0.94926 0.99573 0.94912 0.86372 0.80329 0.82872 0.77579 1.19439 1.20896 1.20901 1.21185 0.94259 0.89326 1.50892 0.90751 1.19566 0.94746 0.91054 1.00056 1.25284 0.91764 0.89156 0.70941 1.90286 1.19587 1.86788 1.34518 1.23702 0.89649 0.90882 1.03313 1.86252 1.34309 1.12581 1.87765 1.19236 0.93410 0.83882 0.94668 1.20494 0.98637 0.91770 1.06530 1.20939 0.96751 0.94567 0.97797 1.21014 0.92839 0.99454 1.05318 1.20938 0.99248 0.92350 0.97307 1.21364 0.95557 0.97365 1.08901 0.92803 0.92576 0.92580 0.89227 0.89217 0.85199 0.85603 0.86195 0.85925 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.29 55.43 0.74 -25.12 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.52 -14.70 8.92 -34.44 -0.31 -15.01 15 8 H 0.07 2.19 6.76 -52.49 -0.35 1.84 15 9 C -0.02 -0.43 5.40 -29.04 -0.16 -0.58 15 10 C 0.36 7.77 7.23 -29.03 -0.21 7.56 15 11 O -0.44 -11.20 15.60 -13.96 -0.22 -11.42 15 12 C 0.00 0.01 5.16 36.01 0.19 0.19 15 13 O -0.30 -5.35 9.67 -39.38 -0.38 -5.73 15 14 C 0.13 2.04 6.69 -39.22 -0.26 1.77 15 15 C -0.16 -2.09 9.99 -39.43 -0.39 -2.48 15 16 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 15 17 C -0.17 -1.74 10.04 -39.56 -0.40 -2.13 15 18 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 15 19 C -0.21 -2.76 9.04 -39.44 -0.36 -3.12 15 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.06 1.36 8.14 -51.92 -0.42 0.94 15 23 H 0.09 1.29 7.66 -51.93 -0.40 0.89 15 24 H 0.09 1.29 7.66 -51.93 -0.40 0.89 15 25 H 0.13 1.66 8.06 -52.49 -0.42 1.23 15 26 H 0.13 1.02 8.06 -52.49 -0.42 0.60 15 27 H 0.12 0.93 8.06 -52.49 -0.42 0.51 15 28 H 0.12 1.04 8.06 -52.49 -0.42 0.61 15 29 H 0.13 1.51 6.30 -52.48 -0.33 1.18 15 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -31.90 262.62 -6.87 -38.77 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.15 Total: -2.34 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.79 Total: -14.87 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.74 Total: -25.12 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.60 Total: -17.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.90 -6.87 -38.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814615.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.221 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds