Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48495 * 109.46673 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46840 * 299.99524 * 3 2 1 6 6 H 1.48492 * 109.46917 * 59.99863 * 3 2 1 7 7 C 1.37875 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99894 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47065 * 180.02562 * 9 7 2 11 11 O 1.20760 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00130 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.47357 * 179.97438 * 12 10 9 14 14 C 1.35898 * 116.99694 * 180.02562 * 13 12 10 15 15 C 1.38735 * 120.05254 * 179.97438 * 14 13 12 16 16 C 1.38144 * 119.94607 * 179.97438 * 15 14 13 17 17 C 1.38266 * 120.05233 * 0.02562 * 16 15 14 18 18 C 1.38269 * 120.11595 * 359.95530 * 17 16 15 19 19 C 1.38142 * 120.04935 * 0.04230 * 18 17 16 20 20 H 0.97000 * 120.00184 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47278 * 60.00293 * 9 7 2 22 22 H 1.09007 * 109.47168 * 299.99805 * 9 7 2 23 23 H 1.08999 * 109.46805 * 59.99823 * 12 10 9 24 24 H 1.08998 * 109.47364 * 300.00175 * 12 10 9 25 25 H 1.08002 * 120.02704 * 359.70561 * 15 14 13 26 26 H 1.08001 * 119.97447 * 179.97438 * 16 15 14 27 27 H 1.08000 * 119.94089 * 179.97438 * 17 16 15 28 28 H 1.07992 * 119.97577 * 180.02562 * 18 17 16 29 29 H 1.08005 * 120.02748 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 8 3.4176 -3.4239 0.0031 12 6 1.7280 -5.0654 0.0026 13 8 2.8395 -5.9636 0.0032 14 6 2.5582 -7.2932 0.0034 15 6 3.5892 -8.2214 0.0034 16 6 3.3008 -9.5724 0.0042 17 6 1.9858 -9.9997 0.0044 18 6 0.9564 -9.0766 0.0048 19 6 1.2397 -7.7245 0.0041 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 1.1229 -5.2373 -0.8875 24 1 1.1221 -5.2361 0.8924 25 1 4.6165 -7.8882 -0.0016 26 1 4.1030 -10.2955 0.0038 27 1 1.7623 -11.0563 0.0046 28 1 -0.0699 -9.4128 0.0055 29 1 0.4353 -7.0038 0.0040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814615.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -74.577971 kcal Electronic energy + Delta-G solvation = -13760.252616 eV Core-core repulsion = 11226.976718 eV Total energy + Delta-G solvation = -2533.275898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.27394 -39.98895 -38.09041 -35.16289 -32.21347 -31.68835 -30.86814 -29.01938 -25.57605 -23.59239 -22.95970 -20.56242 -19.28770 -18.57713 -17.29090 -17.16696 -16.99243 -16.66091 -15.92261 -15.41147 -15.21345 -15.11883 -14.31166 -14.20313 -13.60328 -13.50276 -13.19454 -12.88305 -12.61812 -12.45494 -12.14313 -12.04127 -11.76914 -11.48589 -10.65751 -10.34135 -9.93481 -9.17543 -8.29104 -6.37401 0.41211 0.50342 1.12197 1.37550 1.38929 1.52887 2.00665 2.39745 2.86799 3.06084 3.33495 3.89693 4.03442 4.10204 4.15708 4.31629 4.48669 4.54395 4.62240 4.76271 5.09107 5.11330 5.23462 5.39056 5.50019 5.61423 5.66707 5.87050 6.05562 6.42216 6.73180 6.79333 7.32009 8.82617 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.079168 B = 0.004914 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.591724 B = 5696.729471 C = 6029.875451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.053 0.947 9 C -0.019 4.019 10 C 0.360 3.640 11 O -0.484 6.484 12 C 0.015 3.985 13 O -0.329 6.329 14 C 0.098 3.902 15 C -0.176 4.176 16 C -0.081 4.081 17 C -0.161 4.161 18 C -0.082 4.082 19 C -0.221 4.221 20 H 0.268 0.732 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -18.659 0.001 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.056 4.056 10 C 0.237 3.763 11 O -0.359 6.359 12 C -0.060 4.060 13 O -0.243 6.243 14 C 0.054 3.946 15 C -0.194 4.194 16 C -0.099 4.099 17 C -0.179 4.179 18 C -0.100 4.100 19 C -0.239 4.239 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.135 0.865 24 H 0.135 0.865 25 H 0.142 0.858 26 H 0.172 0.828 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.090 -18.323 0.002 18.324 hybrid contribution 0.114 1.189 -0.001 1.195 sum 0.204 -17.134 0.001 17.136 Atomic orbital electron populations 1.70017 1.07033 1.28150 1.50871 1.25752 0.95851 1.02678 0.94340 0.85441 0.78578 0.79016 0.78303 1.20104 1.19685 1.19698 1.21424 0.93683 0.91698 1.51759 0.92895 1.19483 0.95024 0.91143 0.99966 1.25364 0.90400 0.91404 0.69150 1.90267 1.21110 1.87879 1.36672 1.23408 0.89364 0.87401 1.05861 1.86164 1.34955 1.14263 1.88922 1.19541 0.95053 0.82623 0.97408 1.20716 0.98295 0.92945 1.07474 1.21303 0.98255 0.93796 0.96544 1.21479 0.92261 1.01122 1.03067 1.21349 1.01052 0.91535 0.96096 1.21576 0.94757 0.98784 1.08828 0.92265 0.92523 0.92530 0.86467 0.86457 0.85816 0.82797 0.82934 0.83033 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 13.29 21.45 0.28 -52.69 15 2 C 0.01 0.73 5.46 84.65 0.46 1.19 15 3 Si 0.96 44.88 29.54 68.60 2.03 46.91 15 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 7 C -0.55 -31.80 8.92 25.60 0.23 -31.57 15 8 H 0.05 3.24 6.76 -2.91 -0.02 3.22 15 9 C -0.02 -0.96 5.40 29.10 0.16 -0.80 15 10 C 0.36 16.06 7.23 29.10 0.21 16.27 15 11 O -0.48 -25.58 15.60 17.63 0.28 -25.30 15 12 C 0.01 0.49 5.16 71.24 0.37 0.85 15 13 O -0.33 -11.96 9.67 -73.32 -0.71 -12.67 15 14 C 0.10 2.93 6.69 22.51 0.15 3.08 15 15 C -0.18 -4.62 9.99 22.37 0.22 -4.39 15 16 C -0.08 -1.57 10.04 22.25 0.22 -1.34 15 17 C -0.16 -2.73 10.04 22.28 0.22 -2.51 15 18 C -0.08 -1.53 10.04 22.25 0.22 -1.31 15 19 C -0.22 -5.27 9.04 22.36 0.20 -5.07 15 20 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 21 H 0.06 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.06 2.78 8.14 -2.38 -0.02 2.76 15 23 H 0.12 3.19 7.66 -2.39 -0.02 3.17 15 24 H 0.12 3.19 7.66 -2.39 -0.02 3.17 15 25 H 0.12 3.24 8.06 -2.91 -0.02 3.22 15 26 H 0.15 2.01 8.06 -2.91 -0.02 1.98 15 27 H 0.15 1.59 8.06 -2.91 -0.02 1.57 15 28 H 0.15 1.89 8.06 -2.91 -0.02 1.87 15 29 H 0.14 2.92 6.30 -2.91 -0.02 2.90 15 Total: -1.00 -69.91 262.62 5.69 -64.22 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.14 Total: 5.13 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 2.67 Total: -25.60 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.28 Total: -52.69 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.43 Total: -37.97 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.91 5.69 -64.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814615.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.358 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds