Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40378 * 120.24506 * 2 1 4 4 N 1.31181 * 120.45221 * 179.72255 * 3 2 1 5 5 C 1.34351 * 120.94038 * 0.50946 * 4 3 2 6 6 N 1.31940 * 131.56527 * 179.80639 * 5 4 3 7 7 N 1.40143 * 107.84018 * 179.71389 * 6 5 4 8 8 C 1.36834 * 126.21588 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00088 * 180.02562 * 8 7 6 10 10 C 1.38663 * 119.99771 * 0.02562 * 8 7 6 11 11 N 1.31539 * 119.99700 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00122 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46659 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47333 * 119.99606 * 12 10 8 15 15 H 1.48500 * 109.46706 * 240.00094 * 12 10 8 16 16 C 1.34824 * 107.57192 * 0.02562 * 7 6 5 17 17 O 1.21708 * 126.03635 * 179.97438 * 16 7 6 18 18 N 1.34716 * 107.92994 * 0.02562 * 16 7 6 19 19 C 1.35407 * 120.23745 * 179.97438 * 2 1 3 20 20 H 1.08992 * 109.47395 * 270.02525 * 1 2 3 21 21 H 1.09002 * 109.46718 * 30.02338 * 1 2 3 22 22 H 1.08997 * 109.46855 * 150.01870 * 1 2 3 23 23 H 1.08003 * 119.76812 * 359.97438 * 3 2 1 24 24 H 0.97008 * 119.99588 * 179.97438 * 11 10 8 25 25 H 1.07992 * 120.42672 * 0.04910 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2127 0.0000 4 7 3.5259 1.2174 0.0055 5 6 4.2209 0.0676 0.0009 6 7 5.5185 -0.1709 0.0015 7 7 5.6996 -1.5606 0.0018 8 6 6.8988 -2.2196 0.0019 9 1 6.9215 -3.2993 0.0017 10 6 8.0847 -1.5011 0.0021 11 7 8.0569 -0.1860 0.0018 12 14 9.7218 -2.4007 0.0015 13 1 9.4813 -3.8661 0.0014 14 1 10.4926 -2.0250 -1.2109 15 1 10.4928 -2.0261 1.2141 16 6 4.4776 -2.1303 0.0009 17 8 4.2445 -3.3248 0.0005 18 7 3.5601 -1.1438 -0.0005 19 6 2.1889 -1.1698 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.6743 2.1482 -0.0004 24 1 8.8866 0.3167 0.0023 25 1 1.6598 -2.1113 0.0001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259894939.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = 97.687744 kcal Electronic energy + Delta-G solvation = -14458.613770 eV Core-core repulsion = 11861.560281 eV Total energy + Delta-G solvation = -2597.053489 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.98008 -38.32311 -35.88000 -34.26221 -33.39622 -32.13586 -29.49968 -26.80241 -25.76966 -23.95674 -22.02221 -20.94821 -18.53875 -17.53250 -16.93353 -16.06276 -15.49814 -15.14507 -14.14983 -13.90721 -13.64653 -13.49091 -12.61228 -12.55228 -12.15798 -11.96762 -11.73791 -11.10972 -11.07613 -10.60323 -10.47961 -10.43234 -9.74815 -9.63636 -8.78437 -8.60070 -7.04188 -6.70571 -4.28592 1.09754 2.05914 2.77699 2.97732 3.07891 3.15258 3.71468 3.79881 4.01429 4.22042 4.88741 4.89326 5.00724 5.15860 5.19923 5.63389 5.69122 5.82856 6.02457 6.25544 6.55050 6.85973 6.97510 7.14437 7.76083 8.05182 8.37110 8.61094 9.05473 9.41600 10.26878 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.058909 B = 0.008567 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.193707 B = 3267.461822 C = 3727.510970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.220 4.220 3 C 0.157 3.843 4 N -0.431 5.431 5 C 0.299 3.701 6 N -0.184 5.184 7 N -0.207 5.207 8 C -0.283 4.283 9 H 0.132 0.868 10 C 0.036 3.964 11 N -0.777 5.777 12 Si 0.946 3.054 13 H -0.260 1.260 14 H -0.272 1.272 15 H -0.272 1.272 16 C 0.541 3.459 17 O -0.595 6.595 18 N -0.486 5.486 19 C 0.154 3.846 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.168 0.832 24 H 0.279 0.721 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 2.147 -0.009 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.229 4.229 3 C -0.036 4.036 4 N -0.144 5.144 5 C -0.058 4.058 6 N -0.020 5.020 7 N -0.008 5.008 8 C -0.415 4.415 9 H 0.150 0.850 10 C -0.179 4.179 11 N -0.406 5.406 12 Si 0.769 3.231 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.197 1.197 16 C 0.246 3.754 17 O -0.477 6.477 18 N -0.205 5.205 19 C 0.023 3.977 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.185 0.815 24 H 0.090 0.910 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.185 2.505 -0.005 7.609 hybrid contribution -0.456 -1.254 0.006 1.334 sum -7.641 1.251 0.001 7.743 Atomic orbital electron populations 1.20425 0.89160 1.02719 1.02086 1.20065 0.97725 0.92756 1.12321 1.22883 0.88527 0.97454 0.94775 1.67812 1.08296 1.23267 1.15022 1.22455 0.90604 0.81393 1.11299 1.79033 1.05759 0.93085 1.24082 1.44887 1.04979 1.02008 1.48958 1.19994 0.78335 0.92625 1.50510 0.85042 1.25709 1.00583 0.95881 0.95707 1.70264 1.29263 1.05310 1.35749 0.85561 0.79191 0.79745 0.78582 1.18362 1.19684 1.19689 1.16231 0.81726 0.84713 0.92702 1.90860 1.81362 1.10617 1.64893 1.44117 1.06527 1.11258 1.58552 1.21658 0.80970 0.99957 0.95067 0.91530 0.91197 0.91822 0.81460 0.91020 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.02 36.01 0.36 -0.44 15 2 C -0.22 -3.21 5.86 -104.83 -0.61 -3.82 15 3 C 0.16 2.47 10.96 -17.02 -0.19 2.29 15 4 N -0.43 -9.23 10.49 -13.52 -0.14 -9.37 15 5 C 0.30 7.51 8.96 -321.68 -2.88 4.63 15 6 N -0.18 -5.23 10.47 29.92 0.31 -4.92 15 7 N -0.21 -5.97 3.68 -15.46 -0.06 -6.02 15 8 C -0.28 -7.87 10.08 -15.16 -0.15 -8.02 15 9 H 0.13 3.51 7.80 -52.49 -0.41 3.10 15 10 C 0.04 0.94 5.49 -17.52 -0.10 0.85 15 11 N -0.78 -21.21 11.81 55.48 0.66 -20.56 15 12 Si 0.95 19.17 29.55 -169.99 -5.02 14.15 15 13 H -0.26 -5.13 7.11 56.52 0.40 -4.72 15 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 16 C 0.54 14.94 8.62 -86.93 -0.75 14.19 15 17 O -0.60 -17.22 17.82 5.18 0.09 -17.13 15 18 N -0.49 -11.62 2.91 -68.37 -0.20 -11.82 15 19 C 0.15 2.79 10.65 -16.18 -0.17 2.62 15 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.07 0.52 8.10 -51.93 -0.42 0.10 15 22 H 0.06 0.54 8.08 -51.93 -0.42 0.12 15 23 H 0.17 1.83 8.06 -52.48 -0.42 1.41 15 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.16 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 235.25 15.07 3.55 3.55 Total: -1.00 -34.06 235.25 -6.96 -41.03 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -1.65 Total: -1.18 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -4.49 Total: 12.28 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.57 Total: -52.68 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.09 Total: -17.13 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -34.06 -6.96 -41.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894939.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.713 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds