Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47010 * 265.20049 * 3 2 1 5 5 H 1.48501 * 109.46705 * 25.19626 * 3 2 1 6 6 H 1.48496 * 109.47357 * 145.19763 * 3 2 1 7 7 C 1.37876 * 119.99894 * 180.27341 * 2 1 3 8 8 H 1.08006 * 120.00326 * 353.95042 * 7 2 1 9 9 C 1.50704 * 119.99767 * 173.95319 * 7 2 1 10 10 C 1.50698 * 115.54919 * 295.88437 * 9 7 2 11 11 C 1.38195 * 119.97141 * 119.98466 * 10 9 7 12 12 C 1.38164 * 120.10884 * 179.97438 * 11 10 9 13 13 C 1.38797 * 120.05323 * 0.02913 * 12 11 10 14 14 O 1.35893 * 120.02382 * 179.97438 * 13 12 11 15 15 C 1.38608 * 119.94343 * 359.96893 * 13 12 11 16 16 C 1.38655 * 119.89712 * 359.73582 * 15 13 12 17 17 O 1.35895 * 120.03109 * 180.26803 * 16 15 13 18 18 C 1.53002 * 117.49914 * 150.21689 * 9 7 2 19 19 C 1.53002 * 117.50060 * 81.55715 * 9 7 2 20 20 H 0.96997 * 120.00655 * 359.72485 * 1 2 3 21 21 H 1.07998 * 119.94717 * 0.02695 * 11 10 9 22 22 H 1.07995 * 119.97157 * 180.02562 * 12 11 10 23 23 H 0.96710 * 114.00025 * 89.99994 * 14 13 12 24 24 H 1.08000 * 120.05316 * 180.02562 * 15 13 12 25 25 H 0.96705 * 114.00065 * 275.62356 * 17 16 15 26 26 H 1.09002 * 117.50020 * 0.02562 * 18 9 7 27 27 H 1.09001 * 117.50118 * 145.01675 * 18 9 7 28 28 H 1.08998 * 117.49662 * 214.97688 * 19 9 7 29 29 H 1.08999 * 117.49689 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5981 1.9878 -1.3951 5 1 1.3994 2.6798 0.5961 6 1 3.4922 1.4716 0.7991 7 6 2.0045 -1.1940 -0.0057 8 1 1.4690 -2.1273 0.0884 9 6 3.5052 -1.1970 -0.1432 10 6 4.0394 -0.6640 -1.4476 11 6 4.8822 0.4312 -1.4526 12 6 5.3740 0.9219 -2.6469 13 6 5.0221 0.3159 -3.8449 14 8 5.5058 0.7994 -5.0193 15 6 4.1770 -0.7827 -3.8425 16 6 3.6896 -1.2771 -2.6423 17 8 2.8652 -2.3574 -2.6363 18 6 4.2731 -2.3426 0.5193 19 6 4.3308 -0.9350 1.1181 20 1 -0.4851 0.8400 0.0040 21 1 5.1575 0.9039 -0.5214 22 1 6.0328 1.7777 -2.6481 23 1 6.3441 0.4022 -5.2926 24 1 3.9023 -1.2559 -4.7737 25 1 1.9342 -2.1426 -2.7851 26 1 3.6928 -3.0944 1.0543 27 1 5.1649 -2.7105 0.0119 28 1 5.2604 -0.3775 1.0043 29 1 3.7884 -0.7601 2.0472 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259910578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = -55.706116 kcal Electronic energy + Delta-G solvation = -15021.855369 eV Core-core repulsion = 12489.397816 eV Total energy + Delta-G solvation = -2532.457553 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16082 -38.96400 -37.89730 -36.20994 -34.27174 -31.11946 -30.12925 -27.83831 -24.22532 -23.70931 -22.71376 -20.98812 -19.83243 -18.83954 -18.02902 -16.92332 -16.87642 -16.47863 -15.75653 -15.54627 -15.18456 -14.77133 -14.49522 -13.65465 -13.58330 -13.25497 -12.92157 -12.56432 -12.13244 -12.05313 -11.75530 -11.55248 -11.32129 -11.04881 -10.80930 -10.36161 -9.72134 -9.16911 -8.30588 -6.34337 0.28232 0.30577 1.36803 1.38786 1.48068 2.37136 2.58709 2.96003 3.14061 3.37079 3.72046 3.96183 4.00240 4.19345 4.38135 4.41800 4.68293 4.77826 4.88379 4.93512 5.02512 5.14346 5.35604 5.44709 5.49136 5.68376 5.74307 5.80739 6.33996 6.71364 6.85286 6.94464 7.32941 8.83027 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026633 B = 0.013117 C = 0.012208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.091082 B = 2134.183176 C = 2293.116598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.031 3.969 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.303 1.303 6 H -0.224 1.224 7 C -0.468 4.468 8 H 0.038 0.962 9 C 0.014 3.986 10 C -0.076 4.076 11 C -0.116 4.116 12 C -0.155 4.155 13 C 0.106 3.894 14 O -0.502 6.502 15 C -0.184 4.184 16 C 0.122 3.878 17 O -0.497 6.497 18 C -0.158 4.158 19 C -0.185 4.185 20 H 0.264 0.736 21 H 0.136 0.864 22 H 0.153 0.847 23 H 0.410 0.590 24 H 0.144 0.856 25 H 0.397 0.603 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 1.614 -6.051 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.167 4.167 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.230 1.230 6 H -0.146 1.146 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.014 3.986 10 C -0.077 4.077 11 C -0.134 4.134 12 C -0.173 4.173 13 C 0.062 3.938 14 O -0.315 6.315 15 C -0.203 4.203 16 C 0.077 3.923 17 O -0.308 6.308 18 C -0.195 4.195 19 C -0.223 4.223 20 H 0.073 0.927 21 H 0.153 0.847 22 H 0.171 0.829 23 H 0.269 0.731 24 H 0.162 0.838 25 H 0.254 0.746 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.636 1.737 -5.941 14.070 hybrid contribution -0.517 0.528 0.010 0.739 sum 12.119 2.265 -5.931 13.681 Atomic orbital electron populations 1.70024 1.08031 1.27903 1.52193 1.25625 0.95012 1.02251 0.93827 0.86215 0.80582 0.79300 0.79746 1.19553 1.23030 1.14645 1.20315 0.88799 0.92696 1.48776 0.94368 1.17895 0.92015 1.01006 0.87723 1.20117 0.96883 0.95370 0.95286 1.21091 0.97228 0.95996 0.99041 1.21579 1.02641 1.02061 0.91066 1.18142 0.97048 0.93003 0.85631 1.84769 1.44336 1.66181 1.36186 1.21813 1.02663 0.97672 0.98160 1.18257 0.94561 0.88116 0.91381 1.84627 1.21790 1.29546 1.94842 1.22769 1.01452 0.91390 1.03925 1.23169 1.01670 0.99145 0.98285 0.92667 0.84675 0.82925 0.73110 0.83840 0.74579 0.90235 0.89056 0.88358 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.96 21.45 0.30 -57.04 15 2 C 0.03 1.76 5.46 84.65 0.46 2.22 15 3 Si 0.92 43.54 24.20 68.60 1.66 45.20 15 4 H -0.27 -12.78 6.95 99.48 0.69 -12.08 15 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 15 6 H -0.22 -9.45 5.50 99.48 0.55 -8.91 15 7 C -0.47 -25.72 8.64 25.60 0.22 -25.50 15 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 15 9 C 0.01 0.65 0.73 -53.67 -0.04 0.61 15 10 C -0.08 -3.14 3.99 -19.75 -0.08 -3.22 15 11 C -0.12 -4.17 6.94 22.24 0.15 -4.02 15 12 C -0.16 -4.81 9.98 22.39 0.22 -4.59 15 13 C 0.11 3.27 6.70 22.49 0.15 3.42 15 14 O -0.50 -12.34 13.50 -92.35 -1.25 -13.59 15 15 C -0.18 -6.25 9.93 22.46 0.22 -6.03 15 16 C 0.12 4.89 6.59 22.49 0.15 5.04 15 17 O -0.50 -20.37 12.36 -92.37 -1.14 -21.52 15 18 C -0.16 -6.35 9.94 30.62 0.30 -6.04 15 19 C -0.19 -7.34 7.79 30.62 0.24 -7.10 15 20 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 21 H 0.14 4.54 5.85 -2.91 -0.02 4.52 15 22 H 0.15 3.73 8.06 -2.91 -0.02 3.71 15 23 H 0.41 5.40 9.06 -74.05 -0.67 4.73 15 24 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 25 H 0.40 15.21 9.06 -74.05 -0.67 14.54 15 26 H 0.08 3.25 8.14 -2.39 -0.02 3.23 15 27 H 0.09 3.29 8.14 -2.39 -0.02 3.27 15 28 H 0.10 3.34 6.83 -2.39 -0.02 3.32 15 29 H 0.08 3.30 8.14 -2.39 -0.02 3.28 15 Total: -1.00 -66.65 248.00 1.25 -65.40 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.33 Total: 26.75 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 2.01 Total: -45.20 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.30 Total: -57.04 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -2.39 Total: -35.10 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.66 Total: 45.20 kcal Total: -66.65 1.25 -65.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259910578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.696 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds